View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_high_6 (Length: 456)
Name: NF2391_high_6
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 38592387 - 38592794
Alignment:
| Q |
18 |
agatgaagtattttcaatggattacactccagctagaaggaagccaccgattcacaattgaaatattgtttgcaatttatgctacaatttattttgcgct |
117 |
Q |
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| T |
38592387 |
agatgaagtattttcaatggattacactccagctagaaggaagccaccgattcacaattgaaatattgtttgcaatttatgctacaatttattttgcgct |
38592486 |
T |
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| Q |
118 |
acgaaaattttgtttatctttaaatattgatcttgtaaagtcataaaatgttgtattttctttttcatgaatataaaacgttgtcattatacatattgat |
217 |
Q |
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| T |
38592487 |
acgaaaattttgtttatctttaaatattgatcttgtaaagtcataaaatgttgtattttctttttcatgaatataaaacgttgtaattatacatattgat |
38592586 |
T |
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| Q |
218 |
atgatacacggcaataaaatcatttttcctacatgatataaaagtatcatgctatggtttgattgatcgacatatatataaataaaataacatgaaattg |
317 |
Q |
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| T |
38592587 |
atgatacacggcaataaaatcatttttcctacatgaaataaaagtatcatgctatggtttgattgatcgacatatatataaataaaatgacatgaaattg |
38592686 |
T |
|
| Q |
318 |
agtcttgatatatagatttaatttgatgattcctttaataaagataacatgaaatattgtacnnnnnnngaagtatagaatacattttattttatcgtct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38592687 |
agtcttgatatatagatttaatttgatgattcctttaataaagataacatgaaatattgtacaaaaaaagaagtatagaatacattttattttatcgtct |
38592786 |
T |
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| Q |
418 |
aatacttc |
425 |
Q |
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|||||||| |
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| T |
38592787 |
aatacttc |
38592794 |
T |
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