View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2391_low_1 (Length: 631)

Name: NF2391_low_1
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2391_low_1
NF2391_low_1
[»] chr1 (2 HSPs)
chr1 (18-394)||(51302546-51302921)
chr1 (436-483)||(23963006-23963053)
[»] chr4 (7 HSPs)
chr4 (23-431)||(50016462-50016872)
chr4 (436-523)||(2588490-2588577)
chr4 (430-522)||(5650759-5650851)
chr4 (436-523)||(16497909-16497996)
chr4 (436-507)||(52249500-52249571)
chr4 (447-507)||(39599164-39599224)
chr4 (436-483)||(28075453-28075500)
[»] chr8 (9 HSPs)
chr8 (21-431)||(44113607-44114019)
chr8 (436-523)||(34784518-34784605)
chr8 (435-523)||(3117706-3117794)
chr8 (436-523)||(1548141-1548228)
chr8 (436-523)||(20900778-20900865)
chr8 (440-523)||(23033404-23033487)
chr8 (436-517)||(3277522-3277603)
chr8 (444-507)||(29168561-29168624)
chr8 (436-468)||(15657351-15657383)
[»] chr5 (5 HSPs)
chr5 (436-523)||(7992407-7992494)
chr5 (436-523)||(32325810-32325897)
chr5 (436-523)||(12904979-12905066)
chr5 (436-483)||(34641930-34641977)
chr5 (436-468)||(28827507-28827539)
[»] chr2 (7 HSPs)
chr2 (436-523)||(44673174-44673261)
chr2 (436-523)||(25438291-25438378)
chr2 (436-505)||(37154903-37154972)
chr2 (436-483)||(21006375-21006422)
chr2 (436-483)||(6536549-6536596)
chr2 (436-483)||(24132215-24132262)
chr2 (436-468)||(39574644-39574676)
[»] chr7 (5 HSPs)
chr7 (436-522)||(36167731-36167817)
chr7 (436-521)||(19886576-19886661)
chr7 (436-523)||(12859244-12859331)
chr7 (436-521)||(32775175-32775260)
chr7 (447-505)||(5465745-5465803)
[»] chr3 (5 HSPs)
chr3 (436-523)||(32130160-32130247)
chr3 (436-523)||(53208684-53208771)
chr3 (436-523)||(7322859-7322946)
chr3 (436-504)||(9454608-9454676)
chr3 (436-468)||(1915488-1915520)
[»] chr6 (1 HSPs)
chr6 (436-523)||(13425675-13425762)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 51302921 - 51302546
Alignment:
Q  18 aacagtgtctttctaatgctttagcactacattagatagtttacatggagcagaaatagaatttctaattgacagccttcaaaactctaaaaagatttta 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  51302921 aacagtgtctttctaattctttagcactacattagatagtttacatggagcagaaatagagtttctaattgacagccttcaaaactctaataagatttta 51302822  T
Q  118 gtctaatgcagccctgatttattcttaatcttgtgatctagtgctattcatcctttactgcaatgactttaagctagtgttgcacaagagttattcaatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51302821 gtctaatgcagccctgatttattcttaatcttgtgatctagtgctattcatcctttactgcaatgactttaagctagtgttgcaca-gagttattcaatt 51302723  T
Q  218 attacattagtctcgtaccctggaaaaaagtcattattaatcgattattttaccctcagaaaacataaacagcaagcatttggaaaaatatacacaagtt 317  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51302722 attacattagtctcgtaccctggaaaaaagtcattattaattgattattttaccctcagaaaacataaacagcaagcatttggaaaaatatacacaagtt 51302623  T
Q  318 caccgactgatgcaacataatgcattgtggatcaatttaaaatattttaatactaaattaaattagaactattgaag 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51302622 caccgactgatgcaacataatgcattgtggatcaatttaaaatattttaatactaaattaaattagaactattgaag 51302546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 23963053 - 23963006
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 483  Q
    |||| ||||| || ||||||||||||||||||||| ||||||||||||    
T  23963053 gtagccaggatcgggtcccagcacgtaggatcgcatgatcttacgtgc 23963006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 23 - 431
Target Start/End: Complemental strand, 50016872 - 50016462
Alignment:
Q  23 tgtctttctaatgctttagcactacattagatagtttacatggagcagaaatagaatttctaattgacagccttcaaaactctaaaaagattttagtcta 122  Q
    |||||||||||||||||||| || |||||| ||||||||||||||| |||| ||  ||||||||||| |||||||||||||||||  |||||||||||||    
T  50016872 tgtctttctaatgctttagctctgcattaggtagtttacatggagctgaaagag--tttctaattgatagccttcaaaactctaatcagattttagtcta 50016775  T
Q  123 atgcagccctgatttattcttaatcttgtgatctagtgctattcatcctttactgcaatgactttaagctagtgttgcacaagagttattcaattattac 222  Q
    |  |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||||||    
T  50016774 acacagccctgatttgttctcaatcttgtgatctagtgctattcatcctttactgccatgactttgagctagtgttgcacaatagttattcaactattac 50016675  T
Q  223 attagtctcgtaccctggaaaaaagtcattattaatcgattattttaccctcagaaaacataaacagcaagcatttggaaaaatatacacaagtt---ca 319  Q
    ||||||||||||||||  ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||   ||    
T  50016674 attagtctcgtaccct-aaaaaaagtcatcattaattgattattttactctcagaaaacataaacagcaagcatttggaaaaatatacataagttcaaca 50016576  T
Q  320 ccgactgatgcaacataatgcattgtggatcaatttaaaatattttaata--ctaaattaaattagaactattgaaggtccacgggtctgggctgttccg 417  Q
    |||||||||  |||||||||||     |||||||||||||||||  ||||  ||||||||||||||||||||||||| || |||||||||||||||||||    
T  50016575 ccgactgatataacataatgcagcacagatcaatttaaaatattacaatactctaaattaaattagaactattgaagatctacgggtctgggctgttccg 50016476  T
Q  418 gtctgctatcagca 431  Q
    |||||| |||||||    
T  50016475 gtctgcaatcagca 50016462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 2588577 - 2588490
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  2588577 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtacttcggtcctacttacgaaccg 2588490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 430 - 522
Target Start/End: Complemental strand, 5650851 - 5650759
Alignment:
Q  430 caataagtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 522  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5650851 caataggtagtcaggaacgagtccaagcacgtaggatcgcacaatctcacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 5650759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 16497996 - 16497909
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||    
T  16497996 gtagtcaagaacgagtcccagcacgtaggatcgcacgatcgtatgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccg 16497909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 436 - 507
Target Start/End: Complemental strand, 52249571 - 52249500
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 507  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52249571 gtagtcaggaatgagtcccagtacgtaggatcgcacgatcttacgtgccacagcacctctaccgtgcttcga 52249500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 507
Target Start/End: Complemental strand, 39599224 - 39599164
Alignment:
Q  447 cgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 507  Q
    ||||||||||| ||||||||| ||||||||||||| ||||| |||||| |  |||||||||    
T  39599224 cgagtcccagctcgtaggatcacacgatcttacgttccacaacacctcaattgtgcttcga 39599164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 28075453 - 28075500
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 483  Q
    |||| ||||| |||||||||||  ||||||||||||||||||||||||    
T  28075453 gtagccaggatcgagtcccagcttgtaggatcgcacgatcttacgtgc 28075500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 431
Target Start/End: Complemental strand, 44114019 - 44113607
Alignment:
Q  21 agtgtctttctaatgctttagcactacattagatagtttacatggagcagaaatagaatttctaattgacagccttcaaaactctaaaaagattttagtc 120  Q
    |||||||||||||||||||||| || |||||| ||||||||||||||| |||| ||  ||||||||||| |||||||||||||||||  |||||||||||    
T  44114019 agtgtctttctaatgctttagctctgcattaggtagtttacatggagctgaaagag--tttctaattgatagccttcaaaactctaatcagattttagtc 44113922  T
Q  121 taatgcagccctgatttattcttaatcttgtgatctagtgctattcatcctttactgcaatgactttaagctagtgttgcacaagagttattcaattatt 220  Q
    |||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||||    
T  44113921 taacacagccctgatttgttctcaatcttgtgatctagtgctattcatcctttactgccatgactttgagctagtgttgcacaatagttattcaactatt 44113822  T
Q  221 acattagtctcgtaccctggaaaaaagtcattattaatcgattattttaccctcagaaaacataaacagcaagcatttggaaaaatatacacaagtt--- 317  Q
    ||||||||||||||||||  ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||       
T  44113821 acattagtctcgtaccct-aaaaaaagtcatcattaattgattattttacactcagaaaacataaacagcaagcattaggaaaaatatacataagttcaa 44113723  T
Q  318 caccgactgatgcaacataatgcattgtggatcaatttaaaatattttaatact--aaattaaattagaactattgaaggtccacgggtctgggctgttc 415  Q
    |||||||||||  |||||||||||     |||||||||||||||||  ||||||  ||||||||||||||||||||||| || |||||||||||||||||    
T  44113722 caccgactgatataacataatgcagcacagatcaatttaaaatattacaatactcaaaattaaattagaactattgaagatcaacgggtctgggctgttc 44113623  T
Q  416 cggtctgctatcagca 431  Q
    |||||||| |||||||    
T  44113622 cggtctgcaatcagca 44113607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 34784605 - 34784518
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34784605 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacaaaccg 34784518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 435 - 523
Target Start/End: Original strand, 3117706 - 3117794
Alignment:
Q  435 agtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3117706 agtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccg 3117794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 436 - 523
Target Start/End: Original strand, 1548141 - 1548228
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1548141 gtagtcaggaacgagtcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaacgtgcttcgatcctacttacgaaccg 1548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 436 - 523
Target Start/End: Original strand, 20900778 - 20900865
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  20900778 gtagtcaggaacaagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgactgtgcttcgatcctacttacaaaccg 20900865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 440 - 523
Target Start/End: Original strand, 23033404 - 23033487
Alignment:
Q  440 tcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23033404 tcaggaacgagtcccagcatgtaggatcgcatgatcttacgtgccacaacacctcgaccgtgcttcgatcctacttacgaaccg 23033487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 436 - 517
Target Start/End: Original strand, 3277522 - 3277603
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttac 517  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  3277522 gtagtcaggaacgaatcccagcatgtaggatcgcacgatcttacgtgccacaacacctcgaccgtgcttcaatcctacttac 3277603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 444 - 507
Target Start/End: Complemental strand, 29168624 - 29168561
Alignment:
Q  444 gaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcga 507  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29168624 gaacgactcccagctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcga 29168561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 15657351 - 15657383
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcg 468  Q
    |||||||||||||||||||||||||||||||||    
T  15657351 gtagtcaggaacgagtcccagcacgtaggatcg 15657383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 7992494 - 7992407
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7992494 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 7992407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 32325897 - 32325810
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32325897 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcgtacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 32325810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 12905066 - 12904979
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  12905066 gtagtcaggaacgagttccagcacgtaggatcgcacgatcttacgtgccacaacacatcgaccatgcttcgatcctacttacgaaccg 12904979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 34641977 - 34641930
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 483  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  34641977 gtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 34641930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 28827507 - 28827539
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcg 468  Q
    |||| ||||||||||||||||||||||||||||    
T  28827507 gtagacaggaacgagtcccagcacgtaggatcg 28827539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 5e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 436 - 523
Target Start/End: Original strand, 44673174 - 44673261
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44673174 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 44673261  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 436 - 523
Target Start/End: Original strand, 25438291 - 25438378
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25438291 gtagtcaggaacgagtcccagcacgtaggatcgcatgatcttacgtgccacagcacctcgaccgtgctttgatcctacttacgaaccg 25438378  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 436 - 505
Target Start/End: Complemental strand, 37154972 - 37154903
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 505  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||||||||  || ||||||||||||||    
T  37154972 gtagtcaagaacgagtcccggctcgtaggatcgcacgatcttacgtgccacgacatctcgaccgtgcttc 37154903  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 21006422 - 21006375
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 483  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  21006422 gtagccaggatcgagtcccagcacgtaggatcgcacgatcttacgtgc 21006375  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 6536549 - 6536596
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 483  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  6536549 gtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 6536596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 24132215 - 24132262
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgc 483  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  24132215 gtagccaggatcgaatcccagcacgtaggatcgcacgatcttacgtgc 24132262  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 39574676 - 39574644
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcg 468  Q
    |||| ||||||||||||||||||||||||||||    
T  39574676 gtagacaggaacgagtcccagcacgtaggatcg 39574644  T

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Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 436 - 522
Target Start/End: Complemental strand, 36167817 - 36167731
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 522  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36167817 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 36167731  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 436 - 521
Target Start/End: Original strand, 19886576 - 19886661
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 521  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19886576 gtagtcaggaacgagtcccagcacgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 19886661  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 12859331 - 12859244
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12859331 gtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccg 12859244  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 436 - 521
Target Start/End: Original strand, 32775175 - 32775260
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 521  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32775175 gtagtcaggaacgagtcccagcatgtaggatcacacgaccttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 32775260  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 505
Target Start/End: Complemental strand, 5465803 - 5465745
Alignment:
Q  447 cgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttc 505  Q
    ||||||||||  ||||||||| |||||| |||||||||||| | |||||||||||||||    
T  5465803 cgagtcccaggtcgtaggatcacacgattttacgtgccacatcccctcgaccgtgcttc 5465745  T

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Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 436 - 523
Target Start/End: Original strand, 32130160 - 32130247
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32130160 gtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 32130247  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 53208771 - 53208684
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  53208771 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgtttcgatcctacttacaaaccg 53208684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 436 - 523
Target Start/End: Original strand, 7322859 - 7322946
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  7322859 gtagccaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcagttctacttacgaaccg 7322946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 436 - 504
Target Start/End: Original strand, 9454608 - 9454676
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgctt 504  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9454608 gtagtcaagaacgattcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgctt 9454676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 1915488 - 1915520
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcg 468  Q
    |||| ||||||||||||||||||||||||||||    
T  1915488 gtagacaggaacgagtcccagcacgtaggatcg 1915520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 13425762 - 13425675
Alignment:
Q  436 gtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 523  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13425762 gtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttatgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 13425675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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