View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_low_10 (Length: 435)
Name: NF2391_low_10
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 96 - 421
Target Start/End: Original strand, 41236481 - 41236805
Alignment:
| Q |
96 |
tcttctgtgattttactcgagttcactgcgattaaactcgacttcatggaattgaaattgatactcagactcaaagtttagttcactgcgtgtttaccaa |
195 |
Q |
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| T |
41236481 |
tcttctgtgactttactcgagttcactgcgattaaactcgacttcatggaattgaaattgatacttagactcaaagtttagttcactgcatgtttaccaa |
41236580 |
T |
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| Q |
196 |
agtttactaaaatttgagtttacagttagatcaacttgaaatagatcattagactcatggaatcgtagttaatttgtggttttaacaattattcgtgtgt |
295 |
Q |
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| T |
41236581 |
agtttactaaaatttgagtt-acagttagatcaacttgaaatagatcattagactcatggaatcgtagttaatttgtggttttaacaattattcgtgtgt |
41236679 |
T |
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| Q |
296 |
atctgtgttatgtgaatatgaaacataaattcaagttttatagcactagtgacaagaaattatcctaaatgtttgcatacccttttgctttcatccatgt |
395 |
Q |
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| T |
41236680 |
atccgtgttatgtgaatatgaaacataaattcaagttttatagcactagtgacaagaaattatcctaaatgtttgcatacccttttgctttcatccatgt |
41236779 |
T |
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| Q |
396 |
caactttgttgccaaccagtattttg |
421 |
Q |
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| T |
41236780 |
caactttgttgccaaccagtattttg |
41236805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 20686929 - 20686875
Alignment:
| Q |
366 |
gtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtatttt |
420 |
Q |
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| T |
20686929 |
gtttgcatacactttagatttcatccatatcaactttgtttccaaccagtatttt |
20686875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 421
Target Start/End: Original strand, 23384951 - 23385006
Alignment:
| Q |
366 |
gtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtattttg |
421 |
Q |
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| T |
23384951 |
gtttgcatacccttttgctttcgtccatatctgctttgttccctaccagtattttg |
23385006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 413
Target Start/End: Complemental strand, 40197382 - 40197340
Alignment:
| Q |
371 |
catacccttttgctttcatccatgtcaactttgttgccaacca |
413 |
Q |
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| T |
40197382 |
catacccgtttgctttcatccatgtcagctttgttgcccacca |
40197340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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