View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2391_low_14 (Length: 399)

Name: NF2391_low_14
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2391_low_14
NF2391_low_14
[»] chr4 (11 HSPs)
chr4 (19-389)||(7875853-7876223)
chr4 (23-253)||(7890626-7890856)
chr4 (23-138)||(4322890-4323005)
chr4 (87-255)||(7888598-7888766)
chr4 (23-138)||(4126225-4126340)
chr4 (23-138)||(4343041-4343156)
chr4 (43-136)||(4351330-4351423)
chr4 (34-120)||(6589823-6589909)
chr4 (309-367)||(7890915-7890973)
chr4 (93-138)||(6792372-6792417)
chr4 (23-135)||(4358512-4358624)
[»] chr7 (5 HSPs)
chr7 (45-232)||(34727547-34727734)
chr7 (43-232)||(34735302-34735491)
chr7 (43-232)||(34730703-34730892)
chr7 (43-145)||(18929079-18929181)
chr7 (90-162)||(34717476-34717548)
[»] chr6 (4 HSPs)
chr6 (20-118)||(5423872-5423970)
chr6 (43-135)||(5431509-5431601)
chr6 (23-113)||(5068862-5068952)
chr6 (23-112)||(5356404-5356493)
[»] scaffold0729 (1 HSPs)
scaffold0729 (93-138)||(6212-6257)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 7875853 - 7876223
Alignment:
Q  19 tacaaagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttatt 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7875853 tacaaagtatatgtttatcacttgttgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttatt 7875952  T
Q  119 caaattgtcaagtacaagaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttg 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7875953 caaattgtcatgtacaagaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttg 7876052  T
Q  219 tagatatctgaaagaagctgccgctgtaaagaaacttggccatcactacattcccaaatttcattaacatttagaaggaagctctgaccttcaaaattgt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7876053 tagatatctgaaagaagctgccgctgtaaagaaacttggccatcactacactcccaaatttcattaacatttagaaggaagctctgaccttcaaaattgt 7876152  T
Q  319 aactcatttgatttcaagtggctttggcgattgttgttttaccaaccccgtttgtctcccatacccctatg 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  7876153 aactcatttgatttcaagtggctttggcgattgttgttttaccaaccccatttgtcccccatacccctatg 7876223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 7890626 - 7890856
Alignment:
Q  23 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaa 122  Q
    ||||||||||||||||||| |||| |||| ||||||||| |||||||||||||| ||| ||  ||||||||||||||||||||| ||||||||||||| |    
T  7890626 aagtatatgtttatcacttgttgtaataactattctacttccatgaccaaaccaatcacgatcaccacacaaagcattcaactgttccaatttattcaca 7890725  T
Q  123 ttgtcaagtacaagaaatatcttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtaga 222  Q
      ||||||||||||||||| |||| |||||| ||| ||| ||  ||||| | | ||||||||||||||||||| ||| |||||||||||  ||||| |||    
T  7890726 ccgtcaagtacaagaaataccttcttatggcaaaggcttctctgtaatatcttctttcctgattcaactgtatctatatgtatctttgttgttttgcaga 7890825  T
Q  223 tatctgaaagaagctgccgctgtaaagaaac 253  Q
    | ||| ||||||| || ||||| ||||||||    
T  7890826 tgtctaaaagaagttgtcgctggaaagaaac 7890856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 4322890 - 4323005
Alignment:
Q  23 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaa 122  Q
    ||||||||| ||||| ||  ||||||| ||||||||||||||  || ||||||| | |  ||| |||||||||||||| | |||||||| |||||||| |    
T  4322890 aagtatatgcttatctctagttgtgatgattattctactacctggagcaaaccatttacaacttccacacaaagcatttagctggtccagtttattcaca 4322989  T
Q  123 ttgtcaagtacaagaa 138  Q
    | ||||||||||||||    
T  4322990 tcgtcaagtacaagaa 4323005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 255
Target Start/End: Original strand, 7888598 - 7888766
Alignment:
Q  87 ccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaagaaatatcttcctatggcgaagtcttttccataataccatttttcctgatt 186  Q
    ||||||||||||||||| || ||||||||||||| ||  || | |||||||||||||||  |    | |||||||| |  ||||| | ||||||||||||    
T  7888598 ccacacaaagcattcaattgatccaatttattcacatcatcgattacaagaaatatctttttcgaacaaagtctttcctgtaatatcttttttcctgatt 7888697  T
Q  187 caactgtatttatctgtatctttgtcattttgtagatatctgaaagaagctgccgctgtaaagaaactt 255  Q
    ||||||  | ||||| |||||||||  ||||| |||| ||  |||||||  |  |||||||||||||||    
T  7888698 caactgagtctatctttatctttgtagttttgcagatgtcaaaaagaagtcgttgctgtaaagaaactt 7888766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 4126225 - 4126340
Alignment:
Q  23 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaa 122  Q
    ||||||||| ||||| ||  | ||||| ||||||||||| ||  || ||||||| | |  ||| |||||||||||||| |  |||||||||||||||| |    
T  4126225 aagtatatgcttatccctggtcgtgatgattattctactccctggagcaaaccatttacaacttccacacaaagcattgagttggtccaatttattcaca 4126324  T
Q  123 ttgtcaagtacaagaa 138  Q
    | ||||||||||||||    
T  4126325 tcgtcaagtacaagaa 4126340  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 4343156 - 4343041
Alignment:
Q  23 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaa 122  Q
    ||||||||| ||||| ||  ||||||| ||||||||||| ||  || |||||||   | |||| |||||||||||||| |  || ||||||||||||| |    
T  4343156 aagtatatgcttatccctggttgtgatgattattctactccctggagcaaaccatctacgacttccacacaaagcatttagttgatccaatttattcaca 4343057  T
Q  123 ttgtcaagtacaagaa 138  Q
    | ||||||||||||||    
T  4343056 tcgtcaagtacaagaa 4343041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 4351423 - 4351330
Alignment:
Q  43 ttgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaag 136  Q
    ||||||| ||||||||||| ||| || ||||||| | |  ||| |||||||||| ||| |  |||||||||||||||| || ||||||||||||    
T  4351423 ttgtgatgattattctactcccaggagcaaaccatttacaacttccacacaaagtattaagttggtccaatttattcacatcgtcaagtacaag 4351330  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 6589823 - 6589909
Alignment:
Q  34 tatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattca 120  Q
    |||| ||| ||||||| ||||||||||| ||  |||||||||| ||| | |||||||||||||| || | ||| ||||||| |||||    
T  6589823 tatctcttgttgtgattattattctactccccggaccaaaccaatcacggctaccacacaaagcctttagctgctccaattcattca 6589909  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 7890915 - 7890973
Alignment:
Q  309 tcaaaattgtaactcatttgatttcaagtggctttggcgattgttgttttaccaacccc 367  Q
    |||||| || |||||||||||||  |||||||||| || ||| ||||||||||||||||    
T  7890915 tcaaaagtgaaactcatttgattataagtggctttagcaattattgttttaccaacccc 7890973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 6792417 - 6792372
Alignment:
Q  93 aaagcattcaactggtccaatttattcaaattgtcaagtacaagaa 138  Q
    |||||||||||||| ||||||||||  | |||||||||||||||||    
T  6792417 aaagcattcaactgctccaatttatcaacattgtcaagtacaagaa 6792372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 4358624 - 4358512
Alignment:
Q  23 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaa 122  Q
    ||||||||| ||||| ||  ||||||| || |||||||| ||  || ||||||| | |  ||| |||||||||||||| |  |||||||||||||| | |    
T  4358624 aagtatatgcttatccctagttgtgatgataattctacttcctggagcaaaccatttacaacttccacacaaagcatttagttggtccaatttattgaca 4358525  T
Q  123 ttgtcaagtacaa 135  Q
    | |||||||||||    
T  4358524 tcgtcaagtacaa 4358512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 34727547 - 34727734
Alignment:
Q  45 gtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaagaaatatct 144  Q
    ||||| ||||||||||| || | ||||||||| ||| |||| ||||||||||||||||| ||||||| |||||||| || |||||| ||||||||||||     
T  34727547 gtgatcattattctacttccttcaccaaaccattcatgacttccacacaaagcattcaattggtccactttattcacatcgtcaagcacaagaaatatcc 34727646  T
Q  145 tcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaag 232  Q
    || |||| |||||||||| |   |||| ||||||||||||||||||||| | ||||| ||| |||||  ||||||||||||| |||||    
T  34727647 tcttatgacgaagtctttcctgcaatatcatttttcctgattcaactgtttctatctttatttttgttgttttgtagatatcagaaag 34727734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 34735302 - 34735491
Alignment:
Q  43 ttgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaagaaatat 142  Q
    ||||||| ||||||||||| || | |||||||||  |  |||| || |||||||||||||| ||||||| |||||||| || ||| || |||||||||||    
T  34735302 ttgtgatgattattctacttccttcaccaaaccatccgtgacttccgcacaaagcattcaattggtccagtttattcacatcgtccagcacaagaaatat 34735401  T
Q  143 cttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaag 232  Q
    | || |||| |||||||||| |   |||| ||||||||||||||||||||||| ||||| ||| |||||  ||||||||||||| |||||    
T  34735402 cctcttatgacgaagtctttcctgcaatatcatttttcctgattcaactgtatctatctttatttttgttgttttgtagatatcagaaag 34735491  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 34730703 - 34730892
Alignment:
Q  43 ttgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaagaaatat 142  Q
    ||||||| ||||||||||| || | |||||||||  |  |||| || |||||||||||||| ||||||| |||||||| || ||| || |||||||||||    
T  34730703 ttgtgatgattattctacttccttcaccaaaccatccgtgacttccgcacaaagcattcaattggtccagtttattcacatcgtccagcacaagaaatat 34730802  T
Q  143 cttcctatggcgaagtcttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaag 232  Q
    | || |||| | |||||||| |   |||| ||||||||||||||||||||| | ||||| ||| |||||  ||||||||||||| |||||    
T  34730803 cctcttatgacaaagtctttcctgcaatatcatttttcctgattcaactgtttctatctttatttttgttgttttgtagatatcagaaag 34730892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 18929181 - 18929079
Alignment:
Q  43 ttgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaagaaatat 142  Q
    ||||||| ||||||||||| || | ||||||||| ||  |||| || |||||||||||||| ||||||  |||||||| || ||| |  |||||||||||    
T  18929181 ttgtgatgattattctacttccttcaccaaaccattcgtgacttccgcacaaagcattcaattggtcctctttattcacatcgtccaacacaagaaatat 18929082  T
Q  143 ctt 145  Q
    |||    
T  18929081 ctt 18929079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 34717476 - 34717548
Alignment:
Q  90 cacaaagcattcaactggtccaatttattcaaattgtcaagtacaagaaatatcttcctatggcgaagtcttt 162  Q
    ||||||||||||||  | |||| |||||||| || ||| || |||||||||||| || |||||||||||||||    
T  34717476 cacaaagcattcaatggctccagtttattcacatcgtccagcacaagaaatatcctcgtatggcgaagtcttt 34717548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 5423970 - 5423872
Alignment:
Q  20 acaaagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttatt 118  Q
    ||||||||||||| |||| ||| ||||||||||||||||||| ||   ||||||||| | | |||| ||||||||||||||||  ||||||||| ||||    
T  5423970 acaaagtatatgtctatctcttgttgtgataattattctactccccgaaccaaaccatttatgacttccacacaaagcattcagttggtccaatgtatt 5423872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 5431601 - 5431509
Alignment:
Q  43 ttgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaatttattcaaattgtcaagtacaa 135  Q
    ||||||||||||||||||| ||   ||||||||| | | |||| ||||||||||||| |||||| ||||| | ||||| || |||||||||||    
T  5431601 ttgtgataattattctactccctaaaccaaaccaattacgacttccacacaaagcatccaactgttccaactcattcacatcgtcaagtacaa 5431509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 5068862 - 5068952
Alignment:
Q  23 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaat 113  Q
    |||||||||| |||| ||| | ||||| ||||||||||| ||   ||||||||||| | |||| |||||||||||||| |  |||||||||    
T  5068862 aagtatatgtctatcccttgtggtgatgattattctacttcccgaaccaaaccacttacgacttccacacaaagcatttagttggtccaat 5068952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 5356404 - 5356493
Alignment:
Q  23 aagtatatgtttatcacttattgtgataattattctactaccatgaccaaaccactcaagactaccacacaaagcattcaactggtccaa 112  Q
    |||||||| | |||| ||| ||||||||||||||||||| ||   ||||||||| | | |||| ||||||||| ||||||  ||||||||    
T  5356404 aagtatatatctatctcttgttgtgataattattctactccccaaaccaaaccaatgatgactgccacacaaaacattcagttggtccaa 5356493  T

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Target: scaffold0729 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 6212 - 6257
Alignment:
Q  93 aaagcattcaactggtccaatttattcaaattgtcaagtacaagaa 138  Q
    |||||||||||||| ||||||||||  | |||||||||||||||||    
T  6212 aaagcattcaactgctccaatttatcaacattgtcaagtacaagaa 6257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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