View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_low_17 (Length: 368)
Name: NF2391_low_17
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 24898960 - 24898624
Alignment:
| Q |
18 |
gtttggagtgagaataatgagatgatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24898960 |
gtttggagtgagaataatgagatgatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatg |
24898861 |
T |
|
| Q |
118 |
ctttctctgtcgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24898860 |
ctttctctgtcgtaggttatgcctgttgagacagtaactggatcattcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatctt |
24898761 |
T |
|
| Q |
218 |
gattcattgtgtatgattgaagaagcagaaaaattatttggactttgaaatgttttagctttttggtggagagttgagaaaaagaatgaatgaatatgag |
317 |
Q |
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|||||||||||||||||| ||| ||| |||||||| ||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24898760 |
gattcattgtgtatgattcaagtagctgaaaaattgtttggacgttgaaatgcttttgctttttggtggagagttgagaaaaagaatgaatgaatatgag |
24898661 |
T |
|
| Q |
318 |
agaagggtggtggtattgttgttatttatagtgtatc |
354 |
Q |
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| T |
24898660 |
agaagggtggtggtattgttgttatttatagtgtatc |
24898624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 24891007 - 24891344
Alignment:
| Q |
18 |
gtttggagtgagaataatgagatgatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatg |
117 |
Q |
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| T |
24891007 |
gtttggagtgagaataatgagatgatttgcatcatgtgtgagttgttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatg |
24891106 |
T |
|
| Q |
118 |
ctttctctgtcgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24891107 |
ctttctctgtcgtaggttatgcctgttgagacagtaactggatctttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatctt |
24891206 |
T |
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| Q |
218 |
gattcattgtgtatgattgaagaagcagaaaaattatttggactttgaaatgttttagctttttggtggagagttgagaaaaagaatgaatgaatatgag |
317 |
Q |
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|||||||||||||||||| ||| ||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24891207 |
gattcattgtgtatgattcaagtagctgaaaaattgtttggactttgaaatgttattgctttttggtggagagttgagaaaaagaatgaatgaatatgag |
24891306 |
T |
|
| Q |
318 |
agaagggtggtggtattgttgttatttatagtgtatctgtg |
358 |
Q |
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| T |
24891307 |
agaagggtggtggta---ttgttatttatagtgtatctgtg |
24891344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 24906419 - 24906139
Alignment:
| Q |
18 |
gtttggagtgagaataatgagatgatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24906419 |
gtttggagtgagaataatgagatgatttgcatcatgtgtgagtagttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatg |
24906320 |
T |
|
| Q |
118 |
ctttctctgtcgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24906319 |
ctttctctgtcgtaggttatgcctgttgagacagtaactggatccttcatgagttgtagtgaaatagggcatagaaaaaatggtgtaacttcaatatctt |
24906220 |
T |
|
| Q |
218 |
gattcattgtgtatgattgaagaagcagaaaaattatttggactttgaaatgttttagctttttggtggagagttgagaaa |
298 |
Q |
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|||||||||||||||||| ||| ||| |||||||| |||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
24906219 |
gattcattgtgtatgattcaagtagctgaaaaattgtttggactttgaaatgttattgctttttggtggagagttgagaaa |
24906139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 43262623 - 43262515
Alignment:
| Q |
61 |
agttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcctgttgagacagtaactggat |
160 |
Q |
| |
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||||||||||| ||||||||||| |||||| | ||||| ||||||||||| || |||||||| ||||||||||| ||||||||||| || || |||| |
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| T |
43262623 |
agttgttttgtaacaggacatgtcatgtttttcttcgaaaatagccatttttcaatactttctctatcgtaggttatacctgttgagactgttaccggat |
43262524 |
T |
|
| Q |
161 |
ccttcatga |
169 |
Q |
| |
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||||||||| |
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|
| T |
43262523 |
ccttcatga |
43262515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 36744552 - 36744684
Alignment:
| Q |
63 |
ttgttttgtgacaggacatgttttgttttccgatgaaaagagccatttttcgatgctttctctgtcgtaggttatgcctgttgagacagtaactggatcc |
162 |
Q |
| |
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||||||||| |||||||| || ||||||| ||||||| | ||||||||| ||| ||||||||||||| || || ||||| || | || || ||||| |
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| T |
36744552 |
ttgttttgtaacaggacaagtattgttttggaatgaaaataaccatttttctatgttttctctgtcgtacgtaattcctgtggaaagtgtgacaggatct |
36744651 |
T |
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| Q |
163 |
ttcatgagttgtagtgaaatagggcatagaaaa |
195 |
Q |
| |
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||||| |||||||| ||||| ||||| |||||| |
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| T |
36744652 |
ttcataagttgtagggaaattgggcaaagaaaa |
36744684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 33089116 - 33089075
Alignment:
| Q |
105 |
ccatttttcgatgctttctctgtcgtaggttatgcctgttga |
146 |
Q |
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| T |
33089116 |
ccatttttcgatgctgtctctgtcgtaggttatgccggttga |
33089075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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