View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_low_2 (Length: 625)
Name: NF2391_low_2
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_2 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 7 - 625
Target Start/End: Original strand, 90751 - 91379
Alignment:
| Q |
7 |
cgagtgagatgaaggaggtgtgtcatgatgtaaaacgtacagttagac----tgatgtaattcctagagcataggctgtcgaaaattatgccgtaatacc |
102 |
Q |
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| T |
90751 |
cgagtgaactgaaggaggtgtgagatgatgtaaaacgtacaattagaccgatcgatgtaatttctagagcataggctgtcgaaaattatgcagtaatacc |
90850 |
T |
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| Q |
103 |
actgcttttacgcacatatatggtcgctgaaattgaaatgtgtaaccactgttggtgctaatttttagtagtgtttgatttgcgtctgttatgcaggtga |
202 |
Q |
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| T |
90851 |
actgcttttacacacatatatggtcactgaaatttaaatgtgcagccaaggttggtgctaatttttaatagtgtttgatttgcgtctgttatgcaggtga |
90950 |
T |
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| Q |
203 |
acgaatagagaggaaatatatattgataggggatatggcaatggagtagcaacataacattaaacatgcagaattggtatagtttacaatttgttacaat |
302 |
Q |
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| T |
90951 |
acgaatatagaggaaatatatattgatagtggatatcgcaatggagtagcaacataacattaaaaatgcagaattggtatagtttacaatttgttacaat |
91050 |
T |
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| Q |
303 |
actgattgctactaagaatttgtaatatgatttttattatgtaaatttttaacctacgcaagttcacatgaaagaccaatcacacaaaccctacagtaca |
402 |
Q |
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| T |
91051 |
actgattgctactaagaatttgtaatatgatttttattatgtaaatttctaacctacgcaagttcacatgaaagaccaatcacacaaaccctacagtaca |
91150 |
T |
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| Q |
403 |
atattgaataatttcccaataacaaaataatcacactgtatattgtctaatatgctccatgacctgctcctgcaaaacacatccttgattgcaactcaca |
502 |
Q |
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| T |
91151 |
atattgaataatttcccaataacaaaatagtcacattgtatattgtctaatatgctccatgacctgctcctgcaaaacacatccttgattgcaactcaca |
91250 |
T |
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| Q |
503 |
acaaaacctcacaagatgataatgatttaagttgctttat------gaaagtcgaaacgtcagctgaccccaaaaacatgtattgggaagaggttttgtt |
596 |
Q |
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| T |
91251 |
agaaaatctcacaagatgataatgattcaagttgctatatgtcatcgaaagtcgaaacgtcagctgaccccaaaaacatgtattgggaagaggttttgtt |
91350 |
T |
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| Q |
597 |
gaatctagccaaccaaaatttgatgtttt |
625 |
Q |
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| T |
91351 |
gaatctagtcaaccaaaatttgatgtttt |
91379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 580 - 619
Target Start/End: Complemental strand, 7435451 - 7435412
Alignment:
| Q |
580 |
tgggaagaggttttgttgaatctagccaaccaaaatttga |
619 |
Q |
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| T |
7435451 |
tgggaagaggttttgttgaatctaacaaaccaaaatttga |
7435412 |
T |
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