View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2391_low_20 (Length: 355)
Name: NF2391_low_20
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 47625200 - 47625538
Alignment:
| Q |
1 |
cttggagagctccagtggaggaggaataactatagagctgatcttcaacaggcacctctctgaagaatctttctccctcttgtctgtgctgagaattctc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47625200 |
cttggagagctccagtgaaggaggaataactatagagctgatcttcaacaggcacctctctgaagaatctttctccctcttgtctgtgctgagaattctc |
47625299 |
T |
|
| Q |
101 |
ctgtatattggaggagcccatatatgtgatgagtctctcatttgctcacttaattgaccagatagcttcattatagcctgccgacgaaaggttgaaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47625300 |
ctgtatattggaggagcccatatatgtgatgagtctctcatttgctcacttaattgaccagatagcttcattatagcctgccgacgaaaggttgaaattg |
47625399 |
T |
|
| Q |
201 |
gttatcaaaagaaatttctacactttaatatgaattcaaataataaacacaaaggagatccagagcaacatagccaggcatgcataaaagtctattttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47625400 |
gttatcaaaagaaatttctacactttaatatgaattcaaataataaacacaaaggagatccagagcaacatagccaggcatgcataaaagtctattttta |
47625499 |
T |
|
| Q |
301 |
gttagtcagtggcattgttgatgaataataatacaaatg |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47625500 |
gttagtcagtggcattgttgatgaataataatacaaatg |
47625538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University