View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2391_low_21 (Length: 355)

Name: NF2391_low_21
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2391_low_21
NF2391_low_21
[»] chr2 (4 HSPs)
chr2 (16-327)||(16617421-16617730)
chr2 (16-331)||(25849491-25849796)
chr2 (145-331)||(23282925-23283102)
chr2 (165-264)||(5307672-5307769)
[»] chr7 (2 HSPs)
chr7 (152-236)||(23554428-23554510)
chr7 (283-324)||(23554347-23554388)
[»] chr4 (4 HSPs)
chr4 (146-243)||(35771176-35771271)
chr4 (70-264)||(44099157-44099346)
chr4 (283-331)||(35771402-35771450)
chr4 (70-133)||(12231780-12231843)
[»] chr8 (1 HSPs)
chr8 (146-234)||(22844574-22844660)
[»] chr1 (1 HSPs)
chr1 (177-213)||(27798963-27798999)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 16617421 - 16617730
Alignment:
Q  16 tgagaagaaggatggtgcttaattgaaaaaggagcttgaggtccagcacggtgatactcaaatgaaaaagaaagcaaaaacgatcatgatgtggcacggc 115  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||     
T  16617421 tgagaaggaggatggtgcttaattcaaaaaggagcttgaggtccagcacagtgatactcaaatgaaaaagaaagcaaaaacgatcatgatatggcacggt 16617520  T
Q  116 atcaaatgcgaaggatctgaagnnnnnnngcaatgtgaaggtgtcagtctacaattttaataagctgagaagtagtggaaggacatgttattttggtcta 215  Q
    ||||||||||||||||||||||       |||||| ||||||| | |||||||||||||||||||| ||||||||||||||||  ||||||||||||||     
T  16617521 atcaaatgcgaaggatctgaagaaaaaaagcaatgcgaaggtgacggtctacaattttaataagcttagaagtagtggaaggatgtgttattttggtct- 16617619  T
Q  216 cacaatcaaaattaggtgccccatgaaccgtagaggagaatcctattgatctaagtgacgagggtcgagggagaagattaatagtgattattgtaatggc 315  Q
     |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16617620 -acaaccaaaattaagtgccccatgaaccgtagaggagaatcctattgacctaagtgacgagggtcgagggagaagattaatagtgattattgtaatggc 16617718  T
Q  316 ttgtaataatgt 327  Q
    ||||||||||||    
T  16617719 ttgtaataatgt 16617730  T

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Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 25849491 - 25849796
Alignment:
Q  16 tgagaagaaggatggtgcttaattgaaaaaggagcttgaggtccagcacggtgatactcaaatgaaaaagaaagcaaaaacgatcatgatgtggcacggc 115  Q
    ||||||||| | ||||||| ||||||||||||||||||||| |||| | ||||||||| |||||| ||||||||||||||||  |||||||||| ||| |    
T  25849491 tgagaagaatggtggtgctgaattgaaaaaggagcttgaggcccagtagggtgatacttaaatgacaaagaaagcaaaaacgtccatgatgtggtacgac 25849590  T
Q  116 atcaaatgcgaaggatctgaagnnnnnnngcaatgtgaaggtgtcagtctacaattttaataagctgagaagtagtggaaggacatgttattttggtcta 215  Q
    |||||||||||| |||||||||        ||||| |||||||   || |||||||| || ||||||||||| |||| || |||||||||||||||||      
T  25849591 atcaaatgcgaacgatctgaagaaaaaaa-caatgcgaaggtgctggtatacaatttcaagaagctgagaaggagtgaaaagacatgttattttggtc-- 25849687  T
Q  216 cacaatcaaaattaggtgccccatgaaccgtagaggagaatcctattgatctaagtgacgagggtcgagggagaagattaatagtgattattgtaatggc 315  Q
    ||||| |||||||||||| || | |||| | |||||| |||||||||||  |||||||        ||||||||||||||| |||||||||||||||| |    
T  25849688 cacaaccaaaattaggtgtcctaggaactgcagaggacaatcctattgacttaagtga-------tgagggagaagattaaaagtgattattgtaatgac 25849780  T
Q  316 ttgtaataatgtctta 331  Q
    ||||||||||||||||    
T  25849781 ttgtaataatgtctta 25849796  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 331
Target Start/End: Complemental strand, 23283102 - 23282925
Alignment:
Q  145 gcaatgtgaaggtgtcagtctacaattttaataagctgagaagtagtggaaggacatgttattttggtctacacaatcaaaattaggtgccccatgaacc 244  Q
    |||||| ||||| | |||| |||||||| || ||||||||||| | ||||| ||| |||||||||||||  |||||  |||||||||||||| | ||||     
T  23283102 gcaatgcgaaggggccagtatacaatttcaacaagctgagaaggattggaacgacgtgttattttggtc--cacaactaaaattaggtgccctaggaact 23283005  T
Q  245 gtagaggagaatcctattgatctaagtgacgagggtcgagggagaagattaatagtgattattgtaatggcttgtaataatgtctta 331  Q
    || || || |||||||||||  ||||||| |||||       |||||||||| |||||||||||||||| |||||||||||||||||    
T  23283004 gtcgaagacaatcctattgacttaagtgatgaggg-------agaagattaaaagtgattattgtaatgacttgtaataatgtctta 23282925  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 5307769 - 5307672
Alignment:
Q  165 tacaattttaataagctgagaagtagtggaaggacatgttattttggtctacacaatcaaaattaggtgccccatgaaccgtagaggagaatcctattga 264  Q
    |||||||| || ||||||||||| | ||||||| | || ||||||| ||  ||||| |||||||||||||||||  ||| |||||||| |||| ||||||    
T  5307769 tacaatttcaacaagctgagaaggactggaagggcctgctattttgatc--cacaaccaaaattaggtgccccagaaactgtagaggacaatcatattga 5307672  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 23554510 - 23554428
Alignment:
Q  152 gaaggtgtcagtctacaattttaataagctgagaagtagtggaaggacatgttattttggtctacacaatcaaaattaggtgccc 236  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||  ||||| |||||||||||||||    
T  23554510 gaaggtgtcagtctacaatttaaataagctgagaaggagtggaagggcaagttattttggtc--cacaaccaaaattaggtgccc 23554428  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 23554388 - 23554347
Alignment:
Q  283 agggagaagattaatagtgattattgtaatggcttgtaataa 324  Q
    ||||||||||||||   |||||||||||||||||||||||||    
T  23554388 agggagaagattaaatatgattattgtaatggcttgtaataa 23554347  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 35771176 - 35771271
Alignment:
Q  146 caatgtgaaggtgtcagtctacaattttaataagctgagaagtagtggaaggacatgttattttggtctacacaatcaaaattaggtgccccatgaac 243  Q
    |||||||||||||  ||| |||||||| || ||| ||||||| |||||||| || |||||||||||||  ||||  ||||||||||||||||||||||    
T  35771176 caatgtgaaggtgctagtatacaatttcaacaagttgagaaggagtggaagcacgtgttattttggtc--cacagccaaaattaggtgccccatgaac 35771271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 264
Target Start/End: Original strand, 44099157 - 44099346
Alignment:
Q  70 tactcaaatgaaaaagaaagcaaaaacgatcatgatgtggcacggcatcaaatgcgaaggatctgaagnnnnnnngcaatgtgaaggtgtcagtctacaa 169  Q
    ||||||| ||||||||||||||||| | | |||||  ||||||| ||||||||||||||||||| ||         |||||  |||||| || | |||||    
T  44099157 tactcaattgaaaaagaaagcaaaatccaccatgacatggcacgtcatcaaatgcgaaggatctaaa---aaaaatcaatgccaaggtgccaatatacaa 44099253  T
Q  170 ttttaataagctgagaagtagtggaaggacatgttattttggtctacacaatcaaaattaggtgccccatgaaccgtagaggagaatcctattga 264  Q
    ||| || ||||||||||| ||||||| ||  |||||||||||||  ||||  ||||| ||||||||| | |||  | |||||| |||||||||||    
T  44099254 tttcaacaagctgagaaggagtggaaagaactgttattttggtc--cacagccaaaactaggtgccctaggaagtgcagaggacaatcctattga 44099346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 35771450 - 35771402
Alignment:
Q  283 agggagaagattaatagtgattattgtaatggcttgtaataatgtctta 331  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||    
T  35771450 agggagaagattaaaaattattattgtaatggcttgtaataatgtctta 35771402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 12231843 - 12231780
Alignment:
Q  70 tactcaaatgaaaaagaaagcaaaaacgatcatgatgtggcacggcatcaaatgcgaaggatct 133  Q
    ||||||| |||||| |||||||||||| | |||||||||| ||| |||||||| ||||||||||    
T  12231843 tactcaattgaaaacgaaagcaaaaaccaccatgatgtggaacgacatcaaattcgaaggatct 12231780  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 22844660 - 22844574
Alignment:
Q  146 caatgtgaaggtgtcagtctacaattttaataagctgagaagtagtggaaggacatgttattttggtctacacaatcaaaattaggtgc 234  Q
    |||| |||||||| |||| |||||||| || ||||||||||  ||||||||||| ||||||||| |||  ||||| |||||||||||||    
T  22844660 caatttgaaggtgccagtatacaatttcaacaagctgagaaagagtggaaggacgtgttattttagtc--cacaaccaaaattaggtgc 22844574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 27798963 - 27798999
Alignment:
Q  177 aagctgagaagtagtggaaggacatgttattttggtc 213  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  27798963 aagctgagaaggagtggaaggacctgttattttggtc 27798999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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