View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_low_24 (Length: 336)
Name: NF2391_low_24
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 47310039 - 47309726
Alignment:
| Q |
16 |
attaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgacgagctatccccaaatatctctccaatctccatttc |
115 |
Q |
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| T |
47310039 |
attaattggtctaacaaaattatgttcatgcaactccttattgctccacgtccacaaacaatgacgagctatccccaaatatctctccaatctccatttc |
47309940 |
T |
|
| Q |
116 |
ctctccaaccaacaccatgatttaaattgaaaattaatccaattatccaagttacccataattaaagaattgattgttatcttaatttggaatagcactt |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47309939 |
ctctccaaccaacaccatgatttaaatttaaaattaatccaattatccaagttacccataattaaagaattgattgttatcttcatttggaatagcactt |
47309840 |
T |
|
| Q |
216 |
ttccacagctgcagcacccccttaatgcatgtaaacaagtttcctccacgtcatcgcaataaacacacatttgagggagagacaacaaggagtggtaata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47309839 |
ttccacagctgcagcacccccttaatgcatgtaaacaagtttcctccacgtcatcgcaataaacacacatttgagggagagacaccaaggagtggtaata |
47309740 |
T |
|
| Q |
316 |
acggtgagaataat |
329 |
Q |
| |
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||||||| |||||| |
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| T |
47309739 |
acggtgataataat |
47309726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 21310298 - 21310428
Alignment:
| Q |
16 |
attaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgacgagcta-tccccaaatatctctccaatctccattt |
114 |
Q |
| |
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|||||||||||||||||||| || | |||||||||||| ||||||||| |||||||||||||| | | || | ||||||||||| ||||||||| || |
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| T |
21310298 |
attaattggtctaacaaaatcattttcatgcaactcctaattcctccatgtccacaaacaatggcatgttattgcccaaatatctttccaatctctatcc |
21310397 |
T |
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| Q |
115 |
cctctccaaccaacaccatgatttaaattga |
145 |
Q |
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|| ||||||||| || |||| ||||||||| |
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| T |
21310398 |
cccctccaaccagcatcatggcttaaattga |
21310428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 50564542 - 50564444
Alignment:
| Q |
16 |
attaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgacgagctatc-cccaaatatctctccaatctccatt |
113 |
Q |
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|||| ||||||||||||| |||| | |||||||||||||||||||||| ||| |||||||||| | | | || ||||||||||| ||||||||||||| |
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| T |
50564542 |
attagttggtctaacaaatttattttcatgcaactccttattcctccatgtcgacaaacaatggcatgttgtcgcccaaatatctttccaatctccatt |
50564444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 45089282 - 45089346
Alignment:
| Q |
16 |
attaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgac |
80 |
Q |
| |
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||||||| |||||||||||| | ||||||||||||||||||||||||| || |||||||||| |
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|
| T |
45089282 |
attaattcatctaacaaaattgcattcatgcaactccttattcctccacgttcataaacaatgac |
45089346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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