View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2391_low_27 (Length: 325)
Name: NF2391_low_27
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 3727140 - 3726827
Alignment:
| Q |
1 |
tgaaagcatatcaaatttaattttgatttgcttatttcatcaattttaataagttgtctaatcgtaaacatagcttaattgataaatatcgggtcttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
3727140 |
tgaaagcatatcaaatttaattttgatttgcttatttcatcaattttaataagttgtctaatcgtaaacatagcttaattgataggtaccaggtcttaaa |
3727041 |
T |
|
| Q |
101 |
tagttaagaccctaccattatagatgatctaagagattgcggtatatgtaaaagtatcaccttctatcaagacaccaacaccgcccactttcaaagcctc |
200 |
Q |
| |
|
||||||||| |||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3727040 |
tagttaagatcctatcattgtagatggtctaaaagattgcggtatatgtaaaagtatcaccttctatcaagacaccaacaccgcccactttcaaagcctc |
3726941 |
T |
|
| Q |
201 |
tttggcacctttacttcctttacaaataacaatttttccttcactaacggtgaattcaaa-----agaccattgtatattttaaggcgaataatcagaag |
295 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3726940 |
ttaggcacctttacttcctttacaaataacaatttttccttcactagcggtgaattcaaaaattgagaccattgtatattttaaggcgaataatcagaag |
3726841 |
T |
|
| Q |
296 |
atagagtaaggtac |
309 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3726840 |
atagagtaaggtac |
3726827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 32640355 - 32640405
Alignment:
| Q |
8 |
atatcaaatttaattttgatttgcttatttcatcaattttaataagttgtc |
58 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
32640355 |
atataaaatttaattttaatttgcttatttcattaattttaataagttgtc |
32640405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 23574380 - 23574335
Alignment:
| Q |
13 |
aaatttaattttgatttgcttatttcatcaattttaataagttgtc |
58 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| ||||| |
|
|
| T |
23574380 |
aaatttaattttaatttccttatttcatcaattttaataatttgtc |
23574335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 30905771 - 30905810
Alignment:
| Q |
94 |
tcttaaatagttaagaccctaccattatagatgatctaag |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
30905771 |
tcttaaatagttaagaccctaccattatggatggtctaag |
30905810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 38937685 - 38937646
Alignment:
| Q |
93 |
gtcttaaatagttaagaccctaccattatagatgatctaa |
132 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
38937685 |
gtcttaaatagttaagaccctaccattgtagatggtctaa |
38937646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 27753422 - 27753467
Alignment:
| Q |
13 |
aaatttaattttgatttgcttatttcatcaattttaataagttgtc |
58 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
27753422 |
aaattaaattttaatttgcttatttcatcaattttaataatttgtc |
27753467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 448686 - 448715
Alignment:
| Q |
90 |
cgggtcttaaatagttaagaccctaccatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
448686 |
cgggtcttaaatagttaagaccctaccatt |
448715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University