View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_low_28 (Length: 318)
Name: NF2391_low_28
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_28 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 181 - 299
Target Start/End: Complemental strand, 21626780 - 21626662
Alignment:
| Q |
181 |
tgcatgtactatatatatagttaaaagaagaatattggtggaatgggaaccaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttt |
280 |
Q |
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| T |
21626780 |
tgcatgtactatatatatagttaaaagaagaatattggtggaatgggaaccaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttt |
21626681 |
T |
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| Q |
281 |
tctttgatgcatgcctgct |
299 |
Q |
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| T |
21626680 |
tctttgatgcatgcctgct |
21626662 |
T |
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Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 21626938 - 21626812
Alignment:
| Q |
24 |
tatgtattgtccctgttaactgagctaatctgaattgtaccagaactttacagtaaaaacataacaacaacgagtgtacaactttaaatt-aattaagtg |
122 |
Q |
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| T |
21626938 |
tatgtattgtccctattaactgagttaatctgaattgtaccagaatttcacagtaaaaacataacaacaacgagtgtacaactttaaattaaattaagtg |
21626839 |
T |
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| Q |
123 |
atccttgatttagtgttgccaataact |
149 |
Q |
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| T |
21626838 |
atccttgatttagtgttgccaataact |
21626812 |
T |
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Target: scaffold0041 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 77801 - 77741
Alignment:
| Q |
232 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcat |
292 |
Q |
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| T |
77801 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcat |
77741 |
T |
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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 40888483 - 40888543
Alignment:
| Q |
232 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcat |
292 |
Q |
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| T |
40888483 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcat |
40888543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 28270720 - 28270780
Alignment:
| Q |
232 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcat |
292 |
Q |
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| T |
28270720 |
aacctggtaaggcaataaaagcatctgaatgcttagccatctctgccttcctttgatgcat |
28270780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 14904788 - 14904728
Alignment:
| Q |
232 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcat |
292 |
Q |
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||||||||||||||||||||||||| |||||| ||||| ||||||| || |||| |||||| |
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| T |
14904788 |
aacctggtaaggcaataaaagcatcggaatgcctagccgtctcagcattccttttatgcat |
14904728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 40464572 - 40464636
Alignment:
| Q |
229 |
accaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcatg |
293 |
Q |
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||||||||||||| || ||||| |||||||||| ||| ||| |||||||| |||||||||||| |
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| T |
40464572 |
accaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatg |
40464636 |
T |
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