View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_low_29 (Length: 298)
Name: NF2391_low_29
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 11228546 - 11228276
Alignment:
| Q |
21 |
tggaggtggtggcttagcaagtatttcttctttagttttcttggggtagaagtatgcattccttaagctatatttataggatctccatctatcccctagt |
120 |
Q |
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| T |
11228546 |
tggaggtggtggcttagcaagtatttcttctttagttttcttggggtagaagtatgtattccttaagctatatttataggatctccatctatcccctagt |
11228447 |
T |
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| Q |
121 |
gtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtcaatattttgatataaaaggcacatcaaca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11228446 |
gtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtcaatattttgatataaaaggcacatcaaca |
11228347 |
T |
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| Q |
221 |
aacnnnnnnnnnttaacaaagtcaaaataataacctcaatacactgccattgatctatactatattcttcg |
291 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |
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| T |
11228346 |
aacaaacaaaaattaacaaagtcaaaataataacctcgatacactgccattgatctatactacatttttcg |
11228276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 82 - 291
Target Start/End: Complemental strand, 13552007 - 13551799
Alignment:
| Q |
82 |
cttaagctatatttataggatctccatctatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgta |
181 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13552007 |
cttaagctatatttataggatctccatctatccgctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctagaaatgta |
13551908 |
T |
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| Q |
182 |
tttaaaggtcaatattttgatataaaaggcacatcaacaaacnnnnnnnnnttaacaaagtcaaaataataacctcaatacactgccattgatctatact |
281 |
Q |
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| T |
13551907 |
tttaaaggtcaatattttgatataaaaagcgcatcaacaaac-aaaaaaaattaacaaagtcaaaatataaacctcaatacactgccattgatctatact |
13551809 |
T |
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| Q |
282 |
atattcttcg |
291 |
Q |
| |
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| ||| |||| |
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| T |
13551808 |
acatttttcg |
13551799 |
T |
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