View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2391_low_3 (Length: 598)

Name: NF2391_low_3
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2391_low_3
NF2391_low_3
[»] chr7 (27 HSPs)
chr7 (223-592)||(38917072-38917432)
chr7 (25-168)||(38917487-38917630)
chr7 (492-569)||(26199509-26199587)
chr7 (490-571)||(43215182-43215264)
chr7 (492-569)||(22760863-22760941)
chr7 (477-569)||(39499703-39499795)
chr7 (490-569)||(26459406-26459486)
chr7 (477-564)||(41519247-41519335)
chr7 (495-569)||(24513797-24513872)
chr7 (489-570)||(17041007-17041089)
chr7 (492-569)||(20335829-20335907)
chr7 (474-570)||(23552117-23552215)
chr7 (492-563)||(21877814-21877886)
chr7 (491-569)||(23301599-23301678)
chr7 (477-570)||(23945860-23945955)
chr7 (478-528)||(7309398-7309448)
chr7 (529-563)||(42477104-42477138)
chr7 (492-552)||(7499922-7499983)
chr7 (497-569)||(7801180-7801253)
chr7 (490-570)||(14058252-14058333)
chr7 (490-570)||(14368280-14368361)
chr7 (530-571)||(24621813-24621854)
chr7 (490-570)||(45709704-45709785)
chr7 (490-570)||(13106778-13106858)
chr7 (490-569)||(33869441-33869521)
chr7 (478-548)||(45229008-45229080)
chr7 (268-312)||(47813416-47813460)
[»] chr5 (14 HSPs)
chr5 (490-569)||(16773807-16773887)
chr5 (490-570)||(26078047-26078128)
chr5 (494-570)||(30109308-30109385)
chr5 (479-570)||(30883182-30883275)
chr5 (490-570)||(34984805-34984886)
chr5 (491-570)||(43241679-43241759)
chr5 (479-570)||(16436617-16436708)
chr5 (500-570)||(40461619-40461690)
chr5 (499-549)||(19949621-19949671)
chr5 (532-569)||(3252328-3252365)
chr5 (490-569)||(14495801-14495881)
chr5 (490-569)||(21549133-21549213)
chr5 (490-569)||(25627057-25627137)
chr5 (492-528)||(35360084-35360120)
[»] chr3 (24 HSPs)
chr3 (477-569)||(14186648-14186741)
chr3 (492-568)||(47454615-47454692)
chr3 (492-571)||(5499405-5499485)
chr3 (490-569)||(37788461-37788541)
chr3 (492-570)||(8368797-8368876)
chr3 (477-570)||(36720380-36720475)
chr3 (491-570)||(19154630-19154710)
chr3 (477-528)||(52769965-52770017)
chr3 (491-569)||(2597217-2597296)
chr3 (477-570)||(32651420-32651514)
chr3 (490-571)||(10499105-10499187)
chr3 (490-558)||(4844507-4844576)
chr3 (490-558)||(4870203-4870272)
chr3 (494-570)||(8051213-8051290)
chr3 (490-569)||(10445135-10445216)
chr3 (515-567)||(10682964-10683017)
chr3 (489-549)||(21960571-21960632)
chr3 (541-570)||(24481580-24481609)
chr3 (490-566)||(53412948-53413025)
chr3 (495-558)||(12761523-12761587)
chr3 (490-569)||(16354888-16354968)
chr3 (490-569)||(28703400-28703480)
chr3 (490-549)||(29563920-29563980)
chr3 (538-570)||(34622567-34622599)
[»] chr2 (22 HSPs)
chr2 (491-570)||(35710390-35710470)
chr2 (490-572)||(3001376-3001459)
chr2 (494-569)||(12994376-12994452)
chr2 (490-569)||(19244109-19244189)
chr2 (490-570)||(4060210-4060291)
chr2 (478-570)||(29503270-29503363)
chr2 (490-569)||(40416386-40416466)
chr2 (492-570)||(37480074-37480153)
chr2 (492-570)||(39714991-39715070)
chr2 (491-569)||(42327392-42327471)
chr2 (477-529)||(33582014-33582067)
chr2 (533-569)||(5147719-5147755)
chr2 (494-569)||(42860348-42860424)
chr2 (492-558)||(21213780-21213847)
chr2 (495-569)||(28846691-28846766)
chr2 (490-570)||(19322767-19322848)
chr2 (494-570)||(34041588-34041665)
chr2 (490-569)||(13803495-13803575)
chr2 (491-570)||(30808644-30808724)
chr2 (533-569)||(35916086-35916122)
chr2 (495-570)||(38854463-38854539)
chr2 (475-514)||(39764989-39765029)
[»] chr8 (10 HSPs)
chr8 (477-567)||(3624582-3624673)
chr8 (490-569)||(968362-968442)
chr8 (480-570)||(19703472-19703564)
chr8 (492-570)||(16852339-16852418)
chr8 (490-569)||(18540298-18540378)
chr8 (490-570)||(8484998-8485079)
chr8 (515-571)||(17727447-17727504)
chr8 (492-558)||(18546360-18546427)
chr8 (495-572)||(34966851-34966929)
chr8 (490-570)||(35641897-35641978)
[»] chr6 (15 HSPs)
chr6 (490-571)||(33549102-33549184)
chr6 (477-558)||(3715463-3715546)
chr6 (492-549)||(346551-346608)
chr6 (477-570)||(12234489-12234584)
chr6 (479-569)||(14557962-14558053)
chr6 (490-566)||(4105051-4105131)
chr6 (535-569)||(22995153-22995187)
chr6 (535-569)||(23793213-23793247)
chr6 (496-569)||(32439805-32439879)
chr6 (490-570)||(12188299-12188380)
chr6 (490-549)||(6385882-6385942)
chr6 (479-569)||(11423566-11423658)
chr6 (535-567)||(22995077-22995109)
chr6 (535-567)||(23793291-23793323)
chr6 (492-563)||(34444809-34444881)
[»] scaffold0258 (1 HSPs)
scaffold0258 (490-569)||(15319-15399)
[»] chr1 (24 HSPs)
chr1 (490-565)||(9224779-9224855)
chr1 (490-565)||(14787332-14787408)
chr1 (490-572)||(51814491-51814574)
chr1 (478-569)||(2219972-2220065)
chr1 (492-571)||(25297770-25297850)
chr1 (229-296)||(16138143-16138210)
chr1 (477-565)||(17745238-17745328)
chr1 (477-569)||(50901581-50901675)
chr1 (529-570)||(34460945-34460986)
chr1 (229-296)||(16127053-16127120)
chr1 (232-299)||(33731163-33731230)
chr1 (519-569)||(38978967-38979018)
chr1 (492-569)||(19528325-19528403)
chr1 (499-572)||(29817672-29817746)
chr1 (493-570)||(40257398-40257476)
chr1 (490-551)||(50919972-50920034)
chr1 (492-549)||(52029935-52029993)
chr1 (490-570)||(8177178-8177259)
chr1 (478-569)||(11068826-11068919)
chr1 (490-570)||(36371469-36371550)
chr1 (490-569)||(9165191-9165271)
chr1 (491-566)||(15786317-15786393)
chr1 (490-549)||(28411350-28411410)
chr1 (479-569)||(44961765-44961857)
[»] chr4 (19 HSPs)
chr4 (477-569)||(47044717-47044810)
chr4 (490-569)||(37109347-37109427)
chr4 (477-570)||(21660126-21660221)
chr4 (477-570)||(21668890-21668985)
chr4 (477-569)||(46545711-46545805)
chr4 (493-565)||(13901746-13901819)
chr4 (492-548)||(19112929-19112986)
chr4 (490-566)||(52254400-52254477)
chr4 (491-569)||(3780657-3780736)
chr4 (477-570)||(7949436-7949531)
chr4 (491-565)||(43623441-43623516)
chr4 (490-562)||(306306-306379)
chr4 (490-566)||(7292794-7292871)
chr4 (492-569)||(19229206-19229283)
chr4 (477-529)||(47386773-47386826)
chr4 (478-569)||(51948480-51948573)
chr4 (490-569)||(1730485-1730565)
chr4 (479-569)||(8306485-8306577)
chr4 (491-558)||(30557267-30557335)
[»] scaffold0118 (1 HSPs)
scaffold0118 (490-569)||(41629-41709)
[»] scaffold0211 (1 HSPs)
scaffold0211 (490-569)||(24053-24133)
[»] scaffold0006 (1 HSPs)
scaffold0006 (477-558)||(162991-163074)
[»] scaffold0008 (1 HSPs)
scaffold0008 (478-529)||(49347-49399)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 223 - 592
Target Start/End: Complemental strand, 38917432 - 38917072
Alignment:
Q  223 ggcagccttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgcaatagttgaccatctgcatcatcatt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38917432 ggcagccttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgcaatagttgaccatctgcatcatcatt 38917333  T
Q  323 aaaccattaaataaatgtttgcacaacaaaatcatgctctatattcatgcttgattttgtaatattcattaactaagttaaccaaaattagacnnnnnnn 422  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||           
T  38917332 aaaccattaaataaatatttgcacaacaaaatcatgctctatattcatgcttgattttgtaatattcat---------taaccaaaattagacaaaaaaa 38917242  T
Q  423 catttttattttacataagtttctttcacccgacctaatannnnnnngaataagctaaattgacactgagagaatcgaacctgagacctcaaagagaagc 522  Q
    |||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||| |||||||||| |||||| |||| |||||||    
T  38917241 catttttattttacataagtttctttcatccgacctaatatttttttgaataagctaaattgacactgaaagaatcgaacttgagacttcaaggagaagc 38917142  T
Q  523 acactctaggtctcaagtcaataccactagaccaactcaagtgggttttacctgacctaatattcttgga 592  Q
    ||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  38917141 acattctaagtctcaagttaataccactagaccaactcaagtgggtttcacctgacctaatattattgga 38917072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 38917630 - 38917487
Alignment:
Q  25 atatcattatcattatttgaagtagcaatgctactattattatgtgatgacatgtcactagaacactgtggcctatcatcctcatgatgttgttcttgtt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38917630 atatcattatcattatttgaagtagcaatgctactattattatgtgatgacatgtcactagaacattgtggcctatcatcctcatgatgttgttcttgtt 38917531  T
Q  125 tggtgtcttggtctgatttggaggcgtcgacatgaaagtccaac 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38917530 tggtgtcttggtctgatttggaggcgtcgacatgaaagtccaac 38917487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 569
Target Start/End: Complemental strand, 26199587 - 26199509
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||| ||||||||| || ||| ||| ||||| |||| |||||||||||| ||||||||||||||||    
T  26199587 gagaatcgaacctgagatctcaaagaggagtacattctcaggtcccaagccaataccactaggccaactcaagtgggtt 26199509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 571
Target Start/End: Complemental strand, 43215264 - 43215182
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 571  Q
    ||||||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||||||||| ||||||||||||    
T  43215264 gagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggtttt 43215182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 569
Target Start/End: Complemental strand, 22760941 - 22760863
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||  | ||| |||||||||  ||||| |||||||||||||| |||||||| ||||||||||    
T  22760941 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 569
Target Start/End: Original strand, 39499703 - 39499795
Alignment:
Q  477 ctaaattgacactgagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||||| || |||||||||| |||||||| |||||| | |||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  39499703 ctaaattgacac-gaaagaatcgaacatgagaccttaaagaggaacacactcacaggtcccaagccaataccactaggccaacccaagtgggtt 39499795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 26459406 - 26459486
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  26459406 gagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 564
Target Start/End: Original strand, 41519247 - 41519335
Alignment:
Q  477 ctaaattgacactgagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagt 564  Q
    |||||||||||| ||||||| ||||||||||||||  | ||| |||||||| |||  || ||||||||||||||||| ||||| |||||    
T  41519247 ctaaattgacacagagagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaataccactaggccaacccaagt 41519335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 569
Target Start/End: Complemental strand, 24513872 - 24513797
Alignment:
Q  495 aatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||||||||||||| |||||| ||||| | |  ||||||| |||||||||||| ||||| ||||||||||    
T  24513872 aatcgaacctgagacctcaaggagaagtacactcccaaatctcaagccaataccactaggccaacccaagtgggtt 24513797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 570
Target Start/End: Original strand, 17041007 - 17041089
Alignment:
Q  489 tgagagaatcgaacctgagacctcaaagagaagcacac-tctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    |||||||||||||||||||||||  | ||| ||||||| || || || |||| |||| ||||||||||||| |||||||||||    
T  17041007 tgagagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaacccaagtgggttt 17041089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 492 - 569
Target Start/End: Original strand, 20335829 - 20335907
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||| | ||| |||||||| | | ||| |||| ||||||| |||||||||| ||||||||||    
T  20335829 gagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 570
Target Start/End: Complemental strand, 23552215 - 23552117
Alignment:
Q  474 aagctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||| || | ||||||||||||| ||||||||  | ||| |||||||||  ||||| |||||||||| |||||| ||||| |||||||||||    
T  23552215 aagctaaattggcattagagagaatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggttt 23552117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 563
Target Start/End: Complemental strand, 21877886 - 21877814
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaag 563  Q
    ||||||||||| |||||||| || ||| ||||| |||  ||||| ||||||||||||||||| ||||||||||    
T  21877886 gagaatcgaacgtgagaccttaaggaggagcaccctcccaggtcccaagtcaataccactaggccaactcaag 21877814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 569
Target Start/End: Original strand, 23301599 - 23301678
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||| ||| ||||||||||| ||| |||||||| | | ||| |||||||||||||| || ||||| ||||||||||    
T  23301599 agagaatcaaacttgagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 570
Target Start/End: Complemental strand, 23945955 - 23945860
Alignment:
Q  477 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||| | ||||| ||||||||||||||||||| ||| |||||| ||| ||||   |||||||||||| |||  |||| |||||||||||    
T  23945955 ctaaattgacattagagaggatcgaacctgagacctcaatgaggagcacattctcaggttctaagtcaataccattaggtcaacccaagtgggttt 23945860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 7309448 - 7309398
Alignment:
Q  478 taaattgacactgagagaatcgaacctgagacctcaaagagaagcacactc 528  Q
    ||||||||||| ||||||||||||| ||||||||| | ||| |||||||||    
T  7309448 taaattgacacggagagaatcgaacttgagacctcgaggaggagcacactc 7309398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 529 - 563
Target Start/End: Original strand, 42477104 - 42477138
Alignment:
Q  529 taggtctcaagtcaataccactagaccaactcaag 563  Q
    |||||||||||||||||||||||||||||| ||||    
T  42477104 taggtctcaagtcaataccactagaccaacccaag 42477138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 552
Target Start/End: Original strand, 7499922 - 7499983
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactag 552  Q
    ||||||||||||||||||||| ||||| |||| ||||| ||||| |||| ||||| ||||||    
T  7499922 gagaatcgaacctgagacctcgaagaggagcaaactctcaggtcccaagccaatatcactag 7499983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 569
Target Start/End: Complemental strand, 7801253 - 7801180
Alignment:
Q  497 tcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||||||||  ||||| |||||||||  ||||| |||||||||||||| || ||||  ||||||||||    
T  7801253 tcgaacctgagaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 570
Target Start/End: Complemental strand, 14058333 - 14058252
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||||||  | ||  |||||||||| ||||  |||| ||||||||| || |||||||||| ||||||    
T  14058333 gagagaatcgaacctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggccaactcaagcgggttt 14058252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 570
Target Start/End: Complemental strand, 14368361 - 14368280
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||||||  | ||  |||||||||| ||||  |||| ||||||||| || |||||||||| ||||||    
T  14368361 gagagaatcgaacctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggccaactcaagcgggttt 14368280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 571
Target Start/End: Complemental strand, 24621854 - 24621813
Alignment:
Q  530 aggtctcaagtcaataccactagaccaactcaagtgggtttt 571  Q
    |||||||||||||||| ||||| |||||||||| ||||||||    
T  24621854 aggtctcaagtcaatatcactaaaccaactcaaatgggtttt 24621813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 570
Target Start/End: Original strand, 45709704 - 45709785
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    |||| |||||||||||||||||| | ||| |||||||||| || || ||||  ||||||||||| ||||| ||| |||||||    
T  45709704 gagataatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaataccactaggccaacccaaatgggttt 45709785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 570
Target Start/End: Original strand, 13106778 - 13106858
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||||||  | ||| || |||||| || || ||| ||||||| |||||| |||| ||| |||||||    
T  13106778 gagagaatcgaacctgagaccttgaggaggagtacactccagatcccaaatcaatactactagatcaacccaactgggttt 13106858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 33869441 - 33869521
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacac-tctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||||||| |||||||  |  || ||||||| || |||||||||| |||||| ||||| ||||| ||||||||||    
T  33869441 gagagaatcgaaccagagaccttgagaaggagcacacttccaggtctcaagccaatactactaggccaacccaagtgggtt 33869521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 548
Target Start/End: Original strand, 45229008 - 45229080
Alignment:
Q  478 taaattgacactg-agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaatacca 548  Q
    ||||||||||||| |||||||||||||| | |||||||  ||||||||||| ||||||| |||  ||||||||    
T  45229008 taaattgacactggagagaatcgaacctaaaacctcaagaagaagcacactcctaggtcccaaaccaatacca 45229080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 47813460 - 47813416
Alignment:
Q  268 ttatctgttcgtccgggtaatcttgctgcaatagttgaccatctg 312  Q
    |||||||||||||| ||||||||||||||||| |  |||||||||    
T  47813460 ttatctgttcgtcctggtaatcttgctgcaattgcagaccatctg 47813416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 490 - 569
Target Start/End: Complemental strand, 16773887 - 16773807
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||| | ||| |||||||||  ||||| |||||||||||||| |||||||||||||||||||    
T  16773887 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 570
Target Start/End: Original strand, 26078047 - 26078128
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||||||  |||||||||| ||| | | ||| |||  |||||||||||| ||||| |||||||||||    
T  26078047 gagagaatcgaacctgagaccttgaagagaagcatactcccaagtcccaaaccaataccactaggccaacccaagtgggttt 26078128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 494 - 570
Target Start/End: Original strand, 30109308 - 30109385
Alignment:
Q  494 gaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||||| ||| |||||||| | ||||| |||| ||||||||| |  ||||| |||||||||||    
T  30109308 gaatcgaacctgagacctcaaggaggagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggttt 30109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 570
Target Start/End: Original strand, 30883182 - 30883275
Alignment:
Q  479 aaattgacactga-gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||  |||||| |||| ||||||||  | ||| |||||||||  ||||| |||| |||||||||||||||||| |||||||||||    
T  30883182 aaattgacactggtgagaattgaacttgagaccttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggttt 30883275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 570
Target Start/End: Complemental strand, 34984886 - 34984805
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||| ||||||  | ||| |||||||||  ||||  |||| |||||||||||||||||| |||||||||||    
T  34984886 gagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgggttt 34984805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 570
Target Start/End: Original strand, 43241679 - 43241759
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacactctagg-tctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||| |||||||||||||||| ||   |||||||| | | || ||||||||||||||||||||||| |||||| ||||    
T  43241679 agagaattgaacctgagacctcaaggaagggcacactccaagatcccaagtcaataccactagaccaacccaagtgagttt 43241759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 570
Target Start/End: Complemental strand, 16436708 - 16436617
Alignment:
Q  479 aaattgacactgagagaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||| |||| || |||||||| ||||||||  | ||| ||||||||| | ||| |||| |||||||||||| ||||| |||||| ||||    
T  16436708 aaattgatactgtgaaaatcgaacatgagaccttgaggaggagcacactccaagtcccaagccaataccactaggccaacccaagtgagttt 16436617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 570
Target Start/End: Original strand, 40461619 - 40461690
Alignment:
Q  500 aacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||  | |||||||||||||| | ||||||||| |||||||| ||| |||| |||||||||||    
T  40461619 aacctgagaccttgaggagaagcacactctcaagtctcaagttaataccaccagatcaacccaagtgggttt 40461690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 549
Target Start/End: Original strand, 19949621 - 19949671
Alignment:
Q  499 gaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccac 549  Q
    |||||||||| ||| | ||| |||||||||||| |||||||||||||||||    
T  19949621 gaacctgagagctcgaggaggagcacactctagatctcaagtcaataccac 19949671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 569
Target Start/End: Original strand, 3252328 - 3252365
Alignment:
Q  532 gtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  3252328 gtctcaagtcaataccactaggccaacccaagtgggtt 3252365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 14495801 - 14495881
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||| || |||||||||| | ||| |||||||||  || || |||||||||||||| |||||||| ||| ||||||    
T  14495801 gagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggtt 14495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 21549133 - 21549213
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||| |||||||| |||||| | || ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  21549133 gagaaaatcgaacttgagactttaaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 569
Target Start/End: Complemental strand, 25627137 - 25627057
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||  | ||| |||||||||  | ||  |||| |||||||||||| ||||| ||||||||||    
T  25627137 gagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 528
Target Start/End: Original strand, 35360084 - 35360120
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactc 528  Q
    ||||||||||||||||||||| | |||||||||||||    
T  35360084 gagaatcgaacctgagacctcgaggagaagcacactc 35360120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 477 - 569
Target Start/End: Complemental strand, 14186741 - 14186648
Alignment:
Q  477 ctaaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||||| | |||||||||||||||||||||  | ||| ||||||||| ||||| |||| |||||||||||| ||||| ||||||||||    
T  14186741 ctaaattgacaccggagagaatcgaacctgagaccttgaggaggagcacactccaggtcccaagacaataccactaggccaacccaagtgggtt 14186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 492 - 568
Target Start/End: Original strand, 47454615 - 47454692
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggt 568  Q
    ||||||||||||||||||||| | ||| |||||||| | || ||||||| ||||||||||||| |||| |||||||||    
T  47454615 gagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagtgggt 47454692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 571
Target Start/End: Original strand, 5499405 - 5499485
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 571  Q
    |||||| |||||| |||||| || ||| |||||||||| || ||||||||||||||||| || ||||| ||||||||||||    
T  5499405 gagaatagaaccttagaccttaaggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggtttt 5499485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 37788461 - 37788541
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||  | ||| |||||||| ||||||  ||||||||||||||| | ||||| ||||||||||    
T  37788461 gagagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaataccactgggccaacccaagtgggtt 37788541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 570
Target Start/End: Original strand, 8368797 - 8368876
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||| ||||||||||||| | ||  |||||||| | |||| |||||||||||||||||| ||||||||| |||||||    
T  8368797 gagaatcaaacctgagacctcgaggatgagcacactaccaggtttcaagtcaataccactaggccaactcaattgggttt 8368876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 570
Target Start/End: Complemental strand, 36720475 - 36720380
Alignment:
Q  477 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||| ||||||||||||||||| ||||| | ||| |||||||||  |  || |||| ||||||||| |||||||| |||||||||||    
T  36720475 ctaaattgacactagagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaataccaccagaccaacccaagtgggttt 36720380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 570
Target Start/End: Complemental strand, 19154710 - 19154630
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    |||||||||||||||||||||  | ||| |||||||||| ||| |||||| |||||| ||||| ||||| ||| |||||||    
T  19154710 agagaatcgaacctgagacctttaggaggagcacactctcaggcctcaagccaatacaactaggccaacccaaatgggttt 19154630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 528
Target Start/End: Original strand, 52769965 - 52770017
Alignment:
Q  477 ctaaattgacactga-gagaatcgaacctgagacctcaaagagaagcacactc 528  Q
    ||||||||||||| | ||||||||||||||||||||||| ||| |||||||||    
T  52769965 ctaaattgacactaaagagaatcgaacctgagacctcaaggaggagcacactc 52770017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 569
Target Start/End: Original strand, 2597217 - 2597296
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||| |||||||||||||||||| ||| |||||||| |||  ||  ||| ||||||||| |||||||| ||||||||||    
T  2597217 agagattcgaacctgagacctcaaggaggagcacactcctaaatccgaagccaataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 570
Target Start/End: Original strand, 32651420 - 32651514
Alignment:
Q  477 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||| |||||||||||| |||||| ||  | ||| |||||||||  ||||| |||| |||||||||||| |||||| ||||||||||    
T  32651420 ctaaattgacactagagagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaataccactaggccaact-aagtgggttt 32651514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 571
Target Start/End: Original strand, 10499105 - 10499187
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtttt 571  Q
    ||||||||||||||||||||||||| ||  |||| ||| | || || |||| ||||||||| || ||||| ||||||||||||    
T  10499105 gagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaataccaccaggccaacccaagtgggtttt 10499187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 558
Target Start/End: Original strand, 4844507 - 4844576
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaac 558  Q
    ||||||||||| ||||||||||| | ||| |||||||| | || || |||||||||||||| ||||||||    
T  4844507 gagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaac 4844576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 558
Target Start/End: Original strand, 4870203 - 4870272
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaac 558  Q
    ||||||||||| ||||||||||| | ||| |||||||| | || || |||||||||||||| ||||||||    
T  4870203 gagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaac 4870272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 570
Target Start/End: Complemental strand, 8051290 - 8051213
Alignment:
Q  494 gaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||| ||||||||| | |||||||| ||| | ||||| |||| ||||||||| || ||||| |||||||||||    
T  8051290 gaatcgaacttgagacctcgaggagaagcatactgccaggtcccaagccaataccaccaggccaacccaagtgggttt 8051213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 10445135 - 10445216
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaa-taccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||| | ||| |||||||| | ||||| |||| ||| | ||||||| ||||| ||||||||||    
T  10445135 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaattgccactaggccaacccaagtgggtt 10445216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 567
Target Start/End: Original strand, 10682964 - 10683017
Alignment:
Q  515 agagaagcacactcta-ggtctcaagtcaataccactagaccaactcaagtggg 567  Q
    |||||||||||||| | ||||||||| ||||||||||||| |||| ||||||||    
T  10682964 agagaagcacactccaaggtctcaagccaataccactagatcaacccaagtggg 10683017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 21960632 - 21960571
Alignment:
Q  489 tgagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccac 549  Q
    ||||||||||||| |||||||||| | ||| |||||||||| ||||| |||| |||||||||    
T  21960632 tgagagaatcgaatctgagacctcgaggaggagcacactctcaggtcccaagccaataccac 21960571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 570
Target Start/End: Complemental strand, 24481609 - 24481580
Alignment:
Q  541 caataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||||||||||||||    
T  24481609 caataccactagaccaactcaagtgggttt 24481580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 566
Target Start/End: Complemental strand, 53413025 - 53412948
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgg 566  Q
    |||||||| |||||||||||||  | ||| |||||||||  ||||  |||| |||||||||||||||||| |||||||    
T  53413025 gagagaattgaacctgagaccttgaggaggagcacactcccaggttacaagccaataccactagaccaacccaagtgg 53412948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 12761587 - 12761523
Alignment:
Q  495 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaac 558  Q
    |||||||||||||| ||||| ||| | |||||||  ||||| |||||||||||||| ||||||||    
T  12761587 aatcgaacctgagagctcaaggaggaacacactcccaggtcccaagtcaataccaccagaccaac 12761523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 16354888 - 16354968
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||||||||||||||   | ||| |||||||||  ||||  |||| |||||||||||| ||||| ||||||||||    
T  16354888 gagagaatcgaacctgagaccctgaggaggagcacactcacaggttccaagccaataccactaggccaacccaagtgggtt 16354968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 28703400 - 28703480
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||  ||||| |||||||| | || || ||||  |||| |||| ||||||| ||||||||||    
T  28703400 gagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagctaatatcactggaccaacccaagtgggtt 28703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 549
Target Start/End: Complemental strand, 29563980 - 29563920
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacac-tctaggtctcaagtcaataccac 549  Q
    |||||||||||||||||||| || | ||||||||||| || || ||||||| |||||||||    
T  29563980 gagagaatcgaacctgagacttcgaggagaagcacacttccagatctcaagccaataccac 29563920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 570
Target Start/End: Original strand, 34622567 - 34622599
Alignment:
Q  538 agtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||||| |||||||||||    
T  34622567 agtcaataccactagaccaacccaagtgggttt 34622599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 570
Target Start/End: Complemental strand, 35710470 - 35710390
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    |||||||||||| ||||||||||||||| | ||||||| || ||||||||||||| |||| ||| ||||||||||||||||    
T  35710470 agagaatcgaacatgagacctcaaagaggaacacactcctaagtctcaagtcaatcccaccagatcaactcaagtgggttt 35710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 490 - 572
Target Start/End: Complemental strand, 3001459 - 3001376
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtttta 572  Q
    |||| |||||||||||||| ||||| ||| ||||||||| ||| |||||||||||||||||||| ||||| |||||| ||||||    
T  3001459 gagataatcgaacctgagatctcaaggaggagcacactcctagatctcaagtcaataccactaggccaacccaagtgagtttta 3001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 494 - 569
Target Start/End: Original strand, 12994376 - 12994452
Alignment:
Q  494 gaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||| |||||||| || ||| |||||||||  ||||| |||||||||||||||||||||||||||| |||||    
T  12994376 gaatcgaacttgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaagcgggtt 12994452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 569
Target Start/End: Complemental strand, 19244189 - 19244109
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||    ||| |||||||||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  19244189 gagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 570
Target Start/End: Original strand, 4060210 - 4060291
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||| ||  | |||||||||||||| |||| ||||  |||||||||||| ||||| |||||||||||    
T  4060210 gagagaatcgaacctgagatcttgaggagaagcacactctcaggtttcaaaccaataccactaggccaacccaagtgggttt 4060291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 570
Target Start/End: Complemental strand, 29503363 - 29503270
Alignment:
Q  478 taaattgacactgagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||| | ||||||||||||||||||||  | ||| |||||||| | ||||| |||  |||||||||||| ||||| |||||||||||    
T  29503363 taaattgacaccgggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggttt 29503270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 40416386 - 40416466
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||||||||||||||| || ||| |||| ||||  ||||  ||||||||||||||||| ||||| ||||||||||    
T  40416386 gagagaatcgaacctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaacccaagtgggtt 40416466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 570
Target Start/End: Complemental strand, 37480153 - 37480074
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||||  | ||| |||||||||| ||||| |||| ||||||||| || ||||| |||||||||||    
T  37480153 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggttt 37480074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 570
Target Start/End: Complemental strand, 39715070 - 39714991
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||||| | ||| |||||||| | ||||| |||||||||||||| |  ||||| |||||||||||    
T  39715070 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggttt 39714991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 491 - 569
Target Start/End: Original strand, 42327392 - 42327471
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 529
Target Start/End: Complemental strand, 33582067 - 33582014
Alignment:
Q  477 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct 529  Q
    ||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||    
T  33582067 ctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactct 33582014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 533 - 569
Target Start/End: Original strand, 5147719 - 5147755
Alignment:
Q  533 tctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||||||||||||||||||| ||||||||||    
T  5147719 tctcaagtcaataccactagaccaacccaagtgggtt 5147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 569
Target Start/End: Complemental strand, 42860424 - 42860348
Alignment:
Q  494 gaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||| ||||||||| | ||| |||||||||  |||||||||||||||| ||| || ||||||||||| ||||    
T  42860424 gaatcgaacttgagacctcgaggaggagcacactcccaggtctcaagtcaatatcaccaggccaactcaagtaggtt 42860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 558
Target Start/End: Complemental strand, 21213847 - 21213780
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaac 558  Q
    ||||||||||||||||||||||| ||| | |||||| | ||||| |||| ||||||||| ||||||||    
T  21213847 gagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaac 21213780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 569
Target Start/End: Complemental strand, 28846766 - 28846691
Alignment:
Q  495 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||| || | ||| |||||||||  ||||| |||||||||||||||||| ||||  |||||||||    
T  28846766 aatcgaacctgagacatcgaggaggagcacactcccaggtcccaagtcaataccactagatcaacctaagtgggtt 28846691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 570
Target Start/End: Complemental strand, 19322848 - 19322767
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||| |||| |||||||  ||||| |||||||||  ||||| |||  ||||||||||||| |||| |||||||||||    
T  19322848 gagagaatcaaaccagagaccttgaagaggagcacactcccaggtcccaaaccaataccactagatcaacccaagtgggttt 19322767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 570
Target Start/End: Original strand, 34041588 - 34041665
Alignment:
Q  494 gaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||| ||||||||||||  | ||| |||||||||| || ||  |||||||||||||||| ||||| |||||||||||    
T  34041588 gaatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggttt 34041665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 569
Target Start/End: Complemental strand, 13803575 - 13803495
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||| |||||||||||||||||  | ||| |||||||| ||| |||||||| ||||| ||||||| |||| ||| ||||||    
T  13803575 gagataatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaatatcactagatcaacccaaatgggtt 13803495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 570
Target Start/End: Original strand, 30808644 - 30808724
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||| |||||||||  | ||| |||| | ||| |||||||||| ||||| ||| |||||||| |||||||||||    
T  30808644 agagaatcgaaactgagaccttgaggaggagcatattctcaggtctcaagccaatatcaccagaccaacccaagtgggttt 30808724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 569
Target Start/End: Complemental strand, 35916122 - 35916086
Alignment:
Q  533 tctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  35916122 tctcaagtcaataccaccagaccaacccaagtgggtt 35916086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 570
Target Start/End: Original strand, 38854463 - 38854539
Alignment:
Q  495 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    |||||||||||||||||  | |||| | ||||||| |||||||||||||| |||||||  ||||| ||| |||||||    
T  38854463 aatcgaacctgagaccttgaggagaggtacactctcaggtctcaagtcaaaaccactaagccaacacaaatgggttt 38854539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 514
Target Start/End: Complemental strand, 39765029 - 39764989
Alignment:
Q  475 agctaaattgacact-gagagaatcgaacctgagacctcaa 514  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  39765029 agctaaattgacactagagggaatcgaacctgagacctcaa 39764989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 477 - 567
Target Start/End: Complemental strand, 3624673 - 3624582
Alignment:
Q  477 ctaaattgacactgagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtggg 567  Q
    |||||||||| | ||||||||||||||||||||||  ||||| |||||||| | ||||| |||| |||||||||||| ||||| ||||||||    
T  3624673 ctaaattgacccggagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 3624582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 569
Target Start/End: Complemental strand, 968442 - 968362
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||| | ||| |||||||| | ||||| |||| ||||||||| || ||||||||||||||||    
T  968442 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 480 - 570
Target Start/End: Original strand, 19703472 - 19703564
Alignment:
Q  480 aattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    |||||||||| | ||||||||||||||||||||  | ||| |||||||||| ||||| |||| |||||||||||| ||||| |||||||||||    
T  19703472 aattgacactagggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggttt 19703564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 492 - 570
Target Start/End: Complemental strand, 16852418 - 16852339
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||||||| | ||| |||||||||  ||||| |||| |||||||||||| ||||| |||||||||||    
T  16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 16852339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 569
Target Start/End: Complemental strand, 18540378 - 18540298
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||  | |||||| ||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  18540378 gagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 18540298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 570
Target Start/End: Complemental strand, 8485079 - 8484998
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||  ||||||||||||||| |||||||||  ||||| ||||  |||||||| || ||||| |||||||||||    
T  8485079 gagagaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccaccaggccaacccaagtgggttt 8484998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 515 - 571
Target Start/End: Original strand, 17727447 - 17727504
Alignment:
Q  515 agagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 571  Q
    |||| |||||||||| |||||||||||||| ||||| |||||||| ||||||||||||    
T  17727447 agaggagcacactctgaggtctcaagtcaacaccacgagaccaacccaagtgggtttt 17727504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 558
Target Start/End: Original strand, 18546360 - 18546427
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaac 558  Q
    ||||||||||||||||||||| | ||| ||||  |||| ||||| ||| |||||||||||||||||||    
T  18546360 gagaatcgaacctgagacctcgaggaggagcatgctctcaggtcccaaatcaataccactagaccaac 18546427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 572
Target Start/End: Original strand, 34966851 - 34966929
Alignment:
Q  495 aatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttta 572  Q
    |||| ||| ||||||||| ||||| |||||||||  | |||||||| ||||||||  |||||||||||||||| |||||    
T  34966851 aatcaaacttgagacctcgaagagtagcacactcccaagtctcaagccaataccatcagaccaactcaagtggatttta 34966929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 570
Target Start/End: Original strand, 35641897 - 35641978
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    |||||||||||||||||||| || | ||| |||||||| | |  ||||||| | ||||||| |||||||| |||||||||||    
T  35641897 gagagaatcgaacctgagacatcgaggaggagcacactcccaaatctcaagccgataccaccagaccaacccaagtgggttt 35641978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 571
Target Start/End: Complemental strand, 33549184 - 33549102
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtttt 571  Q
    ||||||||||||||||||||||| | ||| |||||||| | ||||| |||| ||||||||| |||||||| ||||||||||||    
T  33549184 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtttt 33549102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 558
Target Start/End: Complemental strand, 3715546 - 3715463
Alignment:
Q  477 ctaaattgacactg-agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaac 558  Q
    |||||||||||||| |||||||||||| ||||||||| | |||||||| ||| | || |||||||||||||||||||| |||||    
T  3715546 ctaaattgacactggagagaatcgaacttgagacctcgacgagaagcatactcccagatctcaagtcaataccactagcccaac 3715463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 492 - 549
Target Start/End: Complemental strand, 346608 - 346551
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccac 549  Q
    ||||||||||| ||||||||| | ||||||||||||| ||||| ||||||||||||||    
T  346608 gagaatcgaacatgagacctcgaggagaagcacactccaggtcccaagtcaataccac 346551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 570
Target Start/End: Original strand, 12234489 - 12234584
Alignment:
Q  477 ctaaattgacactg-agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    |||||||||||||| |||||||||||||||||||||| |   | |||||||| | ||||| |||||||||||||| || |||||  ||||||||||    
T  12234489 ctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggccaacctaagtgggttt 12234584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 569
Target Start/End: Complemental strand, 14558053 - 14557962
Alignment:
Q  479 aaattgacactgagagaatcgaacctgagacctcaaagagaagcacac-tctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||| | |||||||||||||||||||   | ||| ||||||| || ||||| |||| ||| ||||| |||||||| ||||||||||    
T  14558053 aaattgacaccgggagaatcgaacctgagacccggaggaggagcacacttccaggtcccaagccaacaccaccagaccaacccaagtgggtt 14557962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 566
Target Start/End: Complemental strand, 4105131 - 4105051
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaata---ccactagaccaactcaagtgg 566  Q
    |||| |||||||||||||| || || ||| ||||||||| ||||| ||||| |||||   |||||||||||||||||||||    
T  4105131 gagaaaatcgaacctgagatcttaaggaggagcacactcctaggtttcaagccaataataccactagaccaactcaagtgg 4105051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 569
Target Start/End: Original strand, 22995153 - 22995187
Alignment:
Q  535 tcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||| |||||||||||||||||||    
T  22995153 tcaagtcaataccaccagaccaactcaagtgggtt 22995187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 569
Target Start/End: Complemental strand, 23793247 - 23793213
Alignment:
Q  535 tcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||| |||||||||||||||||||    
T  23793247 tcaagtcaataccaccagaccaactcaagtgggtt 23793213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 569
Target Start/End: Complemental strand, 32439879 - 32439805
Alignment:
Q  496 atcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||| ||||||||| |||||||||||||| | ||||  |||||||||| ||  | |||||||||||||||||    
T  32439879 atcgaacttgagacctcgaagagaagcacactttcaggttccaagtcaatatcatcataccaactcaagtgggtt 32439805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 570
Target Start/End: Original strand, 12188299 - 12188380
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||| ||| ||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| |||||||||||    
T  12188299 gagagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 12188380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 549
Target Start/End: Complemental strand, 6385942 - 6385882
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccac 549  Q
    |||||||||||||||||||||| || ||| |||||| | | ||||| ||||||||||||||    
T  6385942 gagagaatcgaacctgagaccttaaggaggagcacagtcccaggtcccaagtcaataccac 6385882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 569
Target Start/End: Complemental strand, 11423658 - 11423566
Alignment:
Q  479 aaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||||| ||| |||||||||||||||||| | |||||||| ||||  |  || |||||||||||||| |||||| | |||| |||||    
T  11423658 aaattgacactggagaaaatcgaacctgagacctcgaggagaagcatactcccaaatcccaagtcaataccaccagaccagcccaagcgggtt 11423566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 535 - 567
Target Start/End: Original strand, 22995077 - 22995109
Alignment:
Q  535 tcaagtcaataccactagaccaactcaagtggg 567  Q
    ||||||||||||||| |||||||||||||||||    
T  22995077 tcaagtcaataccaccagaccaactcaagtggg 22995109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 535 - 567
Target Start/End: Complemental strand, 23793323 - 23793291
Alignment:
Q  535 tcaagtcaataccactagaccaactcaagtggg 567  Q
    ||||||||||||||| |||||||||||||||||    
T  23793323 tcaagtcaataccaccagaccaactcaagtggg 23793291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 563
Target Start/End: Complemental strand, 34444881 - 34444809
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaag 563  Q
    ||||||||||||||||||||    ||| |||||||||| ||||| |||||||||||||| || ||||| ||||    
T  34444881 gagaatcgaacctgagaccttggggaggagcacactctaaggtcccaagtcaataccaccaggccaacccaag 34444809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 15319 - 15399
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||| | ||| |||||||| | ||||| |||| ||||||||| |||||||| ||||||||||    
T  15319 gagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 565
Target Start/End: Complemental strand, 9224855 - 9224779
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 565  Q
    ||||||||||||||||||||||||| |||||||| ||||| || ||||||  ||||||||| |||||||| ||||||    
T  9224855 gagagaatcgaacctgagacctcaaggagaagcatactctcagatctcaaagcaataccaccagaccaacccaagtg 9224779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 565
Target Start/End: Original strand, 14787332 - 14787408
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 565  Q
    ||||||||||||||||| ||||  | ||||| |||||||| |||||||||||||||||||||||  |||||||||||    
T  14787332 gagagaatcgaacctgacaccttgaggagaaacacactctcaggtctcaagtcaataccactaggtcaactcaagtg 14787408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 572
Target Start/End: Complemental strand, 51814574 - 51814491
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttta 572  Q
    ||||||||||||||||||||||  | ||| |||||||||| || ||||||||||||||||  || ||||| |||||||||||||    
T  51814574 gagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtttta 51814491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 569
Target Start/End: Complemental strand, 2220065 - 2219972
Alignment:
Q  478 taaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||| || |||||||||||||||||||||| | |||||||||||| | ||||  |||| ||||||||| ||| |||| ||||||||||    
T  2220065 taaattgacattggagagaatcgaacctgagacctcgaggagaagcacactttcaggttccaagccaataccaccagaacaacccaagtgggtt 2219972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 571
Target Start/End: Complemental strand, 25297850 - 25297770
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttt 571  Q
    ||||||| ||||| ||||||| | ||| |||||||||| || ||  |||||||||||||||||||||| ||||||||||||    
T  25297850 gagaatcaaacctcagacctcgaggaggagcacactctcagatcctaagtcaataccactagaccaacccaagtgggtttt 25297770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 16138143 - 16138210
Alignment:
Q  229 cttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgc 296  Q
    ||||||||||| || |||||||||||||||||||| || || ||||||| ||| |||||| |||||||    
T  16138143 cttttcttcaagtgagtgtgccatacattttttatttcattgtctgttcttccaggtaattttgctgc 16138210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 565
Target Start/End: Original strand, 17745238 - 17745328
Alignment:
Q  477 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 565  Q
    ||||||||||||  ||||||||||||| ||||||||| | ||| ||||||| || ||||| |||| |||||||||||| ||||| ||||||    
T  17745238 ctaaattgacaccagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccactaggccaacccaagtg 17745328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 569
Target Start/End: Complemental strand, 50901675 - 50901581
Alignment:
Q  477 ctaaattgacactgagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaa-taccactagaccaactcaagtgggtt 569  Q
    |||||||| ||||||||||||||||  ||||||||| | ||| |||||||| | ||||| |||| ||| ||||||||| ||||| ||||||||||    
T  50901675 ctaaattggcactgagagaatcgaatttgagacctcgaggaggagcacactaccaggtcccaagccaattaccactaggccaacccaagtgggtt 50901581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 570
Target Start/End: Original strand, 34460945 - 34460986
Alignment:
Q  529 taggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  34460945 taggtctcaagtcaataccactaagccaactcaagtgggttt 34460986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 16127053 - 16127120
Alignment:
Q  229 cttttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgc 296  Q
    |||||||||||||| |||||||| | ||||||||| || || ||||||| ||| |||||| |||||||    
T  16127053 cttttcttcaaatgagtgtgccacatattttttatttcattgtctgttcttccaggtaattttgctgc 16127120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 33731163 - 33731230
Alignment:
Q  232 ttcttcaaatgggtgtgccatacattttttatctcgttatctgttcgtccgggtaatcttgctgcaat 299  Q
    ||||||||||| |||||||| ||||||||||| || ||||| |||| ||| |||| | ||||||||||    
T  33731163 ttcttcaaatgcgtgtgccacacattttttatttcattatccgttcttcctggtagttttgctgcaat 33731230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 569
Target Start/End: Original strand, 38978967 - 38979018
Alignment:
Q  519 aagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||| ||||||    
T  38978967 aagcacactcctaggtctcaagtcaataccactaggccaacccaaatgggtt 38979018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 569
Target Start/End: Original strand, 19528325 - 19528403
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||  | ||| ||||||||| ||| || |||| ||||||||| || ||||| ||||||||||    
T  19528325 gagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 572
Target Start/End: Complemental strand, 29817746 - 29817672
Alignment:
Q  499 gaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtttta 572  Q
    |||||||||| ||  ||||| |||||||||| |||||||||||||||| ||| || ||||| |||||| ||||||    
T  29817746 gaacctgagaacttgaagaggagcacactctcaggtctcaagtcaatatcaccaggccaacccaagtgagtttta 29817672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 570
Target Start/End: Complemental strand, 40257476 - 40257398
Alignment:
Q  493 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||| |||| ||||||||| | ||| |||||||||  |||||||||| ||||||||| || ||||| |||||||||||    
T  40257476 agaattgaacttgagacctcgaggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggttt 40257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 551
Target Start/End: Complemental strand, 50920034 - 50919972
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccacta 551  Q
    ||||||||||||||||| |||| || ||  |||||||||| |||| |||||||||||||||||    
T  50920034 gagagaatcgaacctgaaaccttaaggatgagcacactctcaggtttcaagtcaataccacta 50919972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 549
Target Start/End: Original strand, 52029935 - 52029993
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccac 549  Q
    ||||||||||||||||||||  |  || ||||||||| |||||||||||||||||||||    
T  52029935 gagaatcgaacctgagaccttgagaaggagcacactcctaggtctcaagtcaataccac 52029993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 570
Target Start/End: Original strand, 8177178 - 8177259
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||||| ||||  | ||| |||||||||  || || |||| |||||||||||| ||||||||| |||||||    
T  8177178 gagagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccactaggccaactcaaatgggttt 8177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 569
Target Start/End: Original strand, 11068826 - 11068919
Alignment:
Q  478 taaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactctagg-tctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||| ||||||| ||| |||||  ||||||||| |||||||||  || || |||||||||||||| ||| |||| ||| ||||||    
T  11068826 taaattgacactggagagaattgaatctgaggtctcaaagaggagcacactcctggatcccaagtcaataccaccagatcaacccaaatgggtt 11068919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 570
Target Start/End: Complemental strand, 36371550 - 36371469
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||||| ||||||  | ||| |||||||||  ||||  |||| |||||||||||| ||||| |||||||||||    
T  36371550 gagagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggttt 36371469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 9165191 - 9165271
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||| ||||||||||| |  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  9165191 gagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 566
Target Start/End: Original strand, 15786317 - 15786393
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgg 566  Q
    |||||||||||||||||||||  | ||| |||||||| | || || |||| |||||| ||||||||||| |||||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaacccaagtgg 15786393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 549
Target Start/End: Complemental strand, 28411410 - 28411350
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccac 549  Q
    |||||||| ||| |||||||||||||||| |||||||||| |  || ||||||||||||||    
T  28411410 gagagaattgaatctgagacctcaaagaggagcacactctcatatcccaagtcaataccac 28411350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 569
Target Start/End: Complemental strand, 44961857 - 44961765
Alignment:
Q  479 aaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||| |||||||||||||||||||||   | ||| ||||||||| ||  |||||||  ||||||||  ||||||| ||||||||||    
T  44961857 aaattgacactagagagaatcgaacctgagaccctgaggaggagcacactcttaaatctcaagctaataccacctgaccaacccaagtgggtt 44961765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 569
Target Start/End: Complemental strand, 47044810 - 47044717
Alignment:
Q  477 ctaaattgacactgagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||||| ||| ||||||||||||||||||||| | ||| |||| ||||| || || |||||||||||||| || ||||  ||||||||||    
T  47044810 ctaaattgacgctgggagaatcgaacctgagacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 37109347 - 37109427
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||||  | ||| |||||||||  ||||| |||| |||||||||||| ||||| ||||||||||    
T  37109347 gagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 570
Target Start/End: Original strand, 21660126 - 21660221
Alignment:
Q  477 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||| |||| |||||||| ||||||||| | ||  |||||||||  || ||||||||||||||||| |||||||| ||||| |||||    
T  21660126 ctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggttt 21660221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 570
Target Start/End: Original strand, 21668890 - 21668985
Alignment:
Q  477 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||| |||| |||||||| ||||||||| | ||  |||||||||  || ||||||||||||||||| |||||||| ||||| |||||    
T  21668890 ctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaagttggttt 21668985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 569
Target Start/End: Complemental strand, 46545805 - 46545711
Alignment:
Q  477 ctaaattgaca-ctgagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||| | |||| ||||||| |||||| ||  | ||| |||||||||| |||||||||| |||||||||||| ||||| ||||||||||    
T  46545805 ctaaattgacatcagagaaaatcgaatctgagatcttgaggaggagcacactctcaggtctcaagccaataccactaggccaacccaagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 13901819 - 13901746
Alignment:
Q  493 agaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtg 565  Q
    ||||| |||| ||||||||||| ||| | |||||||  |||||||||| |||||||||||||||||| ||||||    
T  13901819 agaattgaacttgagacctcaaggaggaacacactcccaggtctcaagccaataccactagaccaacccaagtg 13901746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 492 - 548
Target Start/End: Complemental strand, 19112986 - 19112929
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaatacca 548  Q
    ||||||||||||||| | ||| ||||| ||||||||| ||||||||||||||||||||    
T  19112986 gagaatcgaacctgataactcgaagaggagcacactcctaggtctcaagtcaatacca 19112929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 566
Target Start/End: Original strand, 52254400 - 52254477
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgg 566  Q
    ||||||||| ||||||| ||||||| ||| |||||||||| |  || |||||||||||||  ||||||||||||||||    
T  52254400 gagagaatctaacctgaaacctcaaggaggagcacactctcatatcccaagtcaataccatcagaccaactcaagtgg 52254477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 569
Target Start/End: Original strand, 3780657 - 3780736
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||| |||||| |||||||||  ||||| | ||| | |||||||||||||||||||| ||||||| || ||||||||    
T  3780657 agagaattgaacctaagacctcaagaagaagaatactttcaggtctcaagtcaataccaccagaccaattctagtgggtt 3780736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 570
Target Start/End: Original strand, 7949436 - 7949531
Alignment:
Q  477 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggttt 570  Q
    ||||||||||||  ||||||||||||||||||||||  | ||| |||||||| | ||||| |||| ||||||| |||| ||| | |||||||||||    
T  7949436 ctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccgctaggccagcccaagtgggttt 7949531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 565
Target Start/End: Original strand, 43623441 - 43623516
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtg 565  Q
    ||||||||||||||||||| |||| ||| |||||||| |  | ||||||||||||| |||||||| ||| ||||||    
T  43623441 agagaatcgaacctgagacttcaaggaggagcacactccctgatctcaagtcaatatcactagactaacccaagtg 43623516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 562
Target Start/End: Original strand, 306306 - 306379
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaa 562  Q
    |||| ||||||| ||||||| | |||||| | |||||||| || || ||| |||||||||||||||||||||||    
T  306306 gagaaaatcgaatctgagactttaaagaggatcacactctcagatcccaaatcaataccactagaccaactcaa 306379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 566
Target Start/End: Original strand, 7292794 - 7292871
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgg 566  Q
    |||||||||||||||||||| |  | ||| |||||||||  ||||  |||| |||||||||||||||||| |||||||    
T  7292794 gagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgg 7292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 569
Target Start/End: Original strand, 19229206 - 19229283
Alignment:
Q  492 gagaatcgaacctgagacctcaaagagaagcacactctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||||||||||| | ||| |||||| |||| ||| || | ||||||||| || ||||| ||| ||||||    
T  19229206 gagaatcgaacctgagacctcgaggaggagcacattctaagtcccaggccaataccaccaggccaacccaaatgggtt 19229283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 529
Target Start/End: Original strand, 47386773 - 47386826
Alignment:
Q  477 ctaaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct 529  Q
    ||||||||||||| |||||||| ||||||||||||||||  |||||| ||||||    
T  47386773 ctaaattgacactagagagaattgaacctgagacctcaagaagaagcgcactct 47386826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 569
Target Start/End: Complemental strand, 51948573 - 51948480
Alignment:
Q  478 taaattgacactg-agagaatcgaacctgagacctcaaagagaagcacact-ctaggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||||| ||||||| |||||||||||||| | |||  ||||||| |||| || ||||||||||| || ||  |||| ||||||||||    
T  51948573 taaattgacactggagagaattgaacctgagacctcgaggaggggcacactcctagatcccaagtcaatactaccaggacaacccaagtgggtt 51948480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 1730485 - 1730565
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||| ||| ||||||| |  ||||| |||||||||| ||||| |||| ||||||||||||  |||| ||||||||||    
T  1730485 gagagaatagaatctgagactttgaagaggagcacactctcaggtcccaagccaataccactaggtcaacccaagtgggtt 1730565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 569
Target Start/End: Complemental strand, 8306577 - 8306485
Alignment:
Q  479 aaattgacact-gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    ||||||||||| ||||||||||||| | |||| || | ||| |||||||||  |||||||||| | || |||  |||||||||||||||||||    
T  8306577 aaattgacactagagagaatcgaacttaagacttcgaggaggagcacactcccaggtctcaagccgatgccaacagaccaactcaagtgggtt 8306485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 30557267 - 30557335
Alignment:
Q  491 agagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaac 558  Q
    |||||||||||| |||| |||| || || ||||||||| || ||| |||||||||||||| ||||||||    
T  30557267 agagaatcgaacatgagccctcgaaaaggagcacactcctacgtcccaagtcaataccaccagaccaac 30557335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 41629 - 41709
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||||||| |||||||||||||| | ||| |||| ||||| || ||||||| |||||||||||| ||||| ||||||||||    
T  41629 gagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggccaacccaagtgggtt 41709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 569
Target Start/End: Complemental strand, 24133 - 24053
Alignment:
Q  490 gagagaatcgaacctgagacctcaaagagaagcacactc-taggtctcaagtcaataccactagaccaactcaagtgggtt 569  Q
    |||| |||||||||||| || || ||||| ||||||||| || ||| ||||||||||||| ||| ||||| ||||||||||    
T  24133 gagataatcgaacctgacacttcgaagaggagcacactcctaagtcccaagtcaataccattaggccaacccaagtgggtt 24053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 558
Target Start/End: Original strand, 162991 - 163074
Alignment:
Q  477 ctaaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactct-aggtctcaagtcaataccactagaccaac 558  Q
    |||||||||||| | |||||||||||||| |||||| |  ||| |||||||||| |||||  ||||||| ||||||||||||||    
T  162991 ctaaattgacaccggagagaatcgaacctcagaccttatggaggagcacactctcaggtcataagtcaaaaccactagaccaac 163074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 49399 - 49347
Alignment:
Q  478 taaattgacactg-agagaatcgaacctgagacctcaaagagaagcacactct 529  Q
    ||||||||||| | |||||||||||||||| ||||| ||||| ||||||||||    
T  49399 taaattgacaccggagagaatcgaacctgatacctcgaagaggagcacactct 49347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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