View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_low_35 (Length: 266)
Name: NF2391_low_35
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 15329470 - 15329710
Alignment:
| Q |
4 |
ggcgctaaagagctggagagtagaatattaaacgagaaggatgaggcaggaaacactattttacacattgcagcactaagtagtgaaccactggtagtgc |
103 |
Q |
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||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15329470 |
ggcgctaaagagcggaagagtagaatattaaacgagagggatgaggcaggaaacacaattttacacattgcagcactaagtagtgaaccactggtagtgc |
15329569 |
T |
|
| Q |
104 |
aggagcttctatcgttggtaaagactaaaatatatttgcacagaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagag |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15329570 |
aggagcttctatcgttggtaaagactaaaataaatttgcacaaaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagag |
15329669 |
T |
|
| Q |
204 |
tatattattcagtgctggatcaaaaccaagcttagaagtca |
244 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| |
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| T |
15329670 |
tatattattcagtgctgggtcaaaaccaagcttagaagtca |
15329710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 15509839 - 15510079
Alignment:
| Q |
4 |
ggcgctaaagagctggagagtagaatattaaacgagaaggatgaggcaggaaacactattttacacattgcagcactaagtagtgaaccactggtagtgc |
103 |
Q |
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||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15509839 |
ggcgctaaagagcggaagagtagaatattaaacgagagggatgaggcaggaaacacaattttacacattgcagcactaagtagtgaaccactggtagtgc |
15509938 |
T |
|
| Q |
104 |
aggagcttctatcgttggtaaagactaaaatatatttgcacagaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagag |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15509939 |
aggagcttctatcgttggtaaagactaaaataaatttgcacaaaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagag |
15510038 |
T |
|
| Q |
204 |
tatattattcagtgctggatcaaaaccaagcttagaagtca |
244 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| |
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| T |
15510039 |
tatattattcagtgctgggtcaaaaccaagcttagaagtca |
15510079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 28865564 - 28865807
Alignment:
| Q |
1 |
agtggcgctaaagagctggagagtagaatattaaacgagaaggatgaggcaggaaacactattttacacattgcagcactaagtagtgaaccactggtag |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
28865564 |
agtggcgctgaagagctggagagtagaatattaaacgagaaggatgaggcaggaaacagtattttacatgttgcagcactaagtagtgaaccactggtag |
28865663 |
T |
|
| Q |
101 |
tgcaggagcttctatcgttggtaaagactaaaatatatttgcacagaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28865664 |
tgcaggagcttctatcgttggtaaagactaaaataaatttgcgcaaaaagaatttggagaataaaacagcattggacatagcaagcattccagagattaa |
28865763 |
T |
|
| Q |
201 |
gagtatattattcagtgctggatcaaaaccaagcttagaagtca |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28865764 |
gagtatattattcagtgctggatcaaaaccaagcttagaagtca |
28865807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 14727509 - 14727605
Alignment:
| Q |
147 |
aaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctggatcaaaaccaagcttagaagtc |
243 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||| |||||| |||||||| |||||||||||||| |||| |||| |||||| ||| |||||||| |
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| T |
14727509 |
aaagaatttggagaacaaaacagcattagacataacaagcaccccagagatgaagagtatattattaagtgttggagcaaaacatagcatagaagtc |
14727605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 30648656 - 30648743
Alignment:
| Q |
157 |
gagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctggatcaaaaccaagcttagaagtca |
244 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||| |||| ||||||| |||| |||||||| |
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| T |
30648656 |
gagaacaaaaccgcattagacatagcaagcacgccagagatcaagagtatattattaagtgttggaacaaaacctagctcagaagtca |
30648743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 26089009 - 26089102
Alignment:
| Q |
147 |
aaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctggatcaaaaccaagcttagaa |
240 |
Q |
| |
|
||||||| ||||||| ||||| ||||| ||||||||||||| |||||| | |||||||||||||| ||| |||| ||||||| ||| ||||| |
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| T |
26089009 |
aaagaatctggagaacaaaaccgcattagacatagcaagcactccagatgtgaagagtatattattaagttttggagcaaaacctagcatagaa |
26089102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 31073922 - 31073809
Alignment:
| Q |
117 |
gttggtaaagactaaaatatatttgcacagaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagt |
216 |
Q |
| |
|
||||||||||||||| ||| ||||| | |||||||| ||||| |||| |||| ||||||||| || | ||||||||||| |||||||| | ||| |
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| T |
31073922 |
gttggtaaagactaagataaatttgaatgcaaagaattcagagaactcaacaacattagacatagcagccagtgcagagatcaagggtatattactaagt |
31073823 |
T |
|
| Q |
217 |
gctggatcaaaacc |
230 |
Q |
| |
|
|||||| ||||||| |
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| T |
31073822 |
gctggagcaaaacc |
31073809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 6611221 - 6611094
Alignment:
| Q |
117 |
gttggtaaagactaaaatatatttgcacagaaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagt |
216 |
Q |
| |
|
||||||||||||||||||| ||||| ||| || ||| ||||||| ||||||||||| ||||||||||||| |||| |||||||||||| |||||||| |
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| T |
6611221 |
gttggtaaagactaaaataaatttgaacacaatgaacttggagagcaaaacagcattagacatagcaagcactccacggatcaagagtatgttattcaga |
6611122 |
T |
|
| Q |
217 |
gctggatcaaaaccaagcttagaagtca |
244 |
Q |
| |
|
| |||| ||||||| ||||||||||||| |
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| T |
6611121 |
gttggagcaaaacctagcttagaagtca |
6611094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 17292958 - 17292861
Alignment:
| Q |
148 |
aagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattattcagtgctggatcaaaaccaagcttagaagtcat |
245 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| || || || ||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
17292958 |
aagaatttggagaacaaaacagcattagacattgccgccactctagagaacaagagtatcttatttagtgctggatcaaaacctagcttagaagtcat |
17292861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 6612008 - 6611950
Alignment:
| Q |
27 |
aatattaaacgagaaggatgaggcaggaaacactattttacacattgcagcactaagta |
85 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||| ||||| || ||| |||||||||||| |
|
|
| T |
6612008 |
aatattaaacaagagggatgaggcaggcaacaccattttgcatatttcagcactaagta |
6611950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 26086740 - 26086675
Alignment:
| Q |
147 |
aaagaatttggagaataaaacagcattggacatagcaagcattccagagatcaagagtatattatt |
212 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
26086740 |
aaagaatttggagaacaaaacagcattagacatagcaagcactccaaagatcaagagtatattatt |
26086675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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