View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_low_40 (Length: 252)
Name: NF2391_low_40
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 1297392 - 1297588
Alignment:
| Q |
42 |
cttatggaccttgtgcaaagagtcgcttgaaacatatcttgggttagacttcggtccaaattgagaatgcaatagtgcgattcatttgttttggttccta |
141 |
Q |
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| T |
1297392 |
cttatggaccttgtgcaaagagtcacttgaaacatatcttgggttagactttggtccaaattgagaatgcaatagtgcaattcatttgttttagttccta |
1297491 |
T |
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| Q |
142 |
aatttaatttctcattcaaaacttataccattaaaatgtgactgtagaaggtttaaagaagtctcaacatcttcaagaaagattaatggttgaaagt |
238 |
Q |
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| T |
1297492 |
aatttaatttctcattcaaaacttataccattaaaatgtgactgtagaaggtttaaagaagtctcaacatcttcaagcaagattaatggttgaaagt |
1297588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1297363 - 1297396
Alignment:
| Q |
1 |
attattctcatttggtcctatgtgaggtccttat |
34 |
Q |
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| T |
1297363 |
attattctcatttggtcctatgtgaggtccttat |
1297396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 51264048 - 51263977
Alignment:
| Q |
15 |
gtcctatgtgaggtccttataatggttcttatggaccttgtgcaaagagtcgcttgaaacatatcttgggtt |
86 |
Q |
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| T |
51264048 |
gtcctatgtaaggtctatatcatggttcctatgagccttgtgcaaagagcagcttgaaacatatcttgggtt |
51263977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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