View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2391_low_44 (Length: 245)

Name: NF2391_low_44
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2391_low_44
NF2391_low_44
[»] chr2 (19 HSPs)
chr2 (1-245)||(10351160-10351398)
chr2 (8-236)||(10340440-10340670)
chr2 (119-236)||(10334831-10334947)
chr2 (146-236)||(10370959-10371049)
chr2 (45-233)||(9287625-9287814)
chr2 (123-233)||(8574427-8574538)
chr2 (1-114)||(10334683-10334796)
chr2 (133-236)||(10346819-10346922)
chr2 (130-231)||(9318666-9318768)
chr2 (134-233)||(9271827-9271932)
chr2 (129-227)||(9069022-9069121)
chr2 (131-231)||(9315189-9315290)
chr2 (105-204)||(7117004-7117104)
chr2 (112-210)||(9076642-9076740)
chr2 (1-63)||(10346689-10346751)
chr2 (128-231)||(9326528-9326632)
chr2 (157-233)||(11425349-11425424)
chr2 (117-210)||(9273159-9273253)
chr2 (81-210)||(9291026-9291158)
[»] chr4 (2 HSPs)
chr4 (1-236)||(26573949-26574182)
chr4 (1-53)||(560542-560591)
[»] chr3 (2 HSPs)
chr3 (112-233)||(37461496-37461618)
chr3 (4-41)||(39426178-39426215)
[»] chr6 (1 HSPs)
chr6 (3-42)||(10857004-10857043)
[»] chr1 (1 HSPs)
chr1 (153-210)||(29462271-29462328)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 10351160 - 10351398
Alignment:
Q  1 atggtgatatgatgatcatgcttgacatgcctatgccaaaatagcttttatcagctccactaaaaatagtggtcttccagttttacacaagagggagaac 100  Q
    ||||||||||||||||||||||| |||||||||||| |      |||||||||||||| |||||||||||| | |  |||||||||||||||||||||||    
T  10351160 atggtgatatgatgatcatgcttcacatgcctatgcaa------cttttatcagctcctctaaaaatagtgctataacagttttacacaagagggagaac 10351253  T
Q  101 agtaatctcagacaaatcaaaaagagggataaaaatgggtgcaactccatcattatcaattcaaactttcctacaaaccaaggtgaccaattccatcaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  10351254 agtaatctcagacaaatcaaaaagagggataaaaatgggtgcaactccatcattatcaattcaacctttcctacaaaccaaggtgagcaattccatcaca 10351353  T
Q  201 agaaacaactggatcatcctatttcagctgcacttctctgctcct 245  Q
    ||||||||| | | |||||||||||||||||||||| ||| ||||    
T  10351354 agaaacaacagaagcatcctatttcagctgcacttcactggtcct 10351398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 10340440 - 10340670
Alignment:
Q  8 tatgatgatcatgcttgacatgcctatgccaaaatagcttttatcagctccactaaaaatagtggtcttccagttttacacaagagggagaacagta--a 105  Q
    ||||||| |||| ||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||    ||||| ||||||||||||| ||  ||   |    
T  10340440 tatgatgctcatacttcacatgcctacgccaaaatagcttttatcagctctactaaaaacagtggtacatcagttctacacaagagggataagtgtgtga 10340539  T
Q  106 tctcagacaaatcaaaaagagggataaaaatgggtgcaactccatcattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaa 205  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||| ||||||| |||||||||| ||||||    
T  10340540 tctcagacaattcaaaaagagggataaaaatgggtgcaactccatcattatcaattcaacctttaccacataccgaggtgactaattccatcataagaaa 10340639  T
Q  206 caactggatcatcctatttcagctgcacttc 236  Q
    |||||||| |||||| |||||||||||||||    
T  10340640 caactggagcatcctgtttcagctgcacttc 10340670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 10334831 - 10334947
Alignment:
Q  119 aaaaagagggataaaaatgggtgcaactccatcattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaactggatcatc 218  Q
    |||||||||||||||| ||||| |  || || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  10334831 aaaaagagggataaaa-tgggtacgcctacaacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatc 10334929  T
Q  219 ctatttcagctgcacttc 236  Q
    || |||||||||||||||    
T  10334930 ctgtttcagctgcacttc 10334947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 10370959 - 10371049
Alignment:
Q  146 tccatcattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaactggatcatcctatttcagctgcacttc 236  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  10370959 tccaacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttc 10371049  T

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Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 9287625 - 9287814
Alignment:
Q  45 cttttatcagctccactaaaaatagtggtcttccagttttacacaagagggagaacagtaatctcagacaaatcaaaaagagggataaaaatgggtgcaa 144  Q
    |||||||||| || ||||||||||||| | |  ||||||||||||||||||| |   || |||| |||||| |||||||||| |||||||||||||||||    
T  9287625 cttttatcagttc-actaaaaatagtgatgtatcagttttacacaagagggatagt-gtgatcttagacaattcaaaaagagagataaaaatgggtgcaa 9287722  T
Q  145 ctccat---cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaactggatcatcctatttcagctgcac 233  Q
    || |||   |||||||||||||  |||||| ||||  ||||||||| || ||||||||||||||||||| || |||||| ||||||||||||    
T  9287723 ctacatattcattatcaattcagcctttcccacaagacaaggtgactaactccatcacaagaaacaacttgagcatcctgtttcagctgcac 9287814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 8574538 - 8574427
Alignment:
Q  123 agagggataaaaatgggtgcaactccat-cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaactggatcatccta 221  Q
    ||||||| ||||||||||||| |||||| |||| | ||||||| |||| | ||||||||||||||| |||||||||||||||||||||| || ||||||     
T  8574538 agagggagaaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctg 8574439  T
Q  222 tttcagctgcac 233  Q
    ||||||||||||    
T  8574438 tttcagctgcac 8574427  T

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Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 10334683 - 10334796
Alignment:
Q  1 atggtgatatgatgatcatgcttgacatgcctatgccaaaatagcttttatcagctccactaaaaatagtggtcttccagttttacacaagagggagaac 100  Q
    |||||||||||||| ||||||||  ||||||||| |||||||| |||||||||||||||||| ||||| || | |  ||||||||||||||||||| |||    
T  10334683 atggtgatatgatgctcatgcttcgcatgcctataccaaaataacttttatcagctccactacaaataatgatgtaacagttttacacaagagggataac 10334782  T
Q  101 agtaatctcagaca 114  Q
     || |||| |||||    
T  10334783 tgtgatcttagaca 10334796  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 10346819 - 10346922
Alignment:
Q  133 aaatgggtgcaactccatcattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaactggatcatcctatttcagctgca 232  Q
    |||||| ||||  ||||||||||||||||||| |||| | ||||||||||||||| ||||||||||||||||||||| ||  | || | |||||||||||    
T  10346819 aaatggctgcacttccatcattatcaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaaccggtgcttcatgtttcagctgca 10346918  T
Q  233 cttc 236  Q
    ||||    
T  10346919 cttc 10346922  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 9318666 - 9318768
Alignment:
Q  130 taaaaatgggtgcaactccat-cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaactggatcatcctatttcagc 228  Q
    |||||||||||||| |||||| |||||||||||||  |||||| ||||||||||||  | |||||||||||||||||||||| ||  ||||| |||||||    
T  9318666 taaaaatgggtgcagctccattcattatcaattcagcctttcccacaaaccaaggtttctaattccatcacaagaaacaacttgagtatcctgtttcagc 9318765  T
Q  229 tgc 231  Q
    |||    
T  9318766 tgc 9318768  T

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Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 9271827 - 9271932
Alignment:
Q  134 aatgggtgcaactccat---cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaaga---aacaactggatcatcctatttcag 227  Q
    |||||||||||||||||   |||||||||||||| |||||| ||||||||||| ||| |||||||| ||||||   ||||||| ||| ||||| ||||||    
T  9271827 aatgggtgcaactccatattcattatcaattcaacctttcccacaaaccaaggagactaattccattacaagaaacaacaacttgattatcctgtttcag 9271926  T
Q  228 ctgcac 233  Q
    ||||||    
T  9271927 ctgcac 9271932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 9069121 - 9069022
Alignment:
Q  129 ataaaaatgggtgcaactccat-cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaactggatcatcctatttcag 227  Q
    ||||||||||||||| || ||| | |||||||||||| |||||| ||||||||||||||| |||| ||||||||||| ||||| || |||| | ||||||    
T  9069121 ataaaaatgggtgcagcttcattctttatcaattcaacctttcccacaaaccaaggtgactaattacatcacaagaagcaacttgagcatcatgtttcag 9069022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 9315189 - 9315290
Alignment:
Q  131 aaaaatgggtgcaactccat-cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaactggatcatcctatttcagct 229  Q
    ||||||| ||||| |||||| |||||||||||||| | |||| ||||||||||  ||| |||||||||||||||||||| | || |||| | ||||||||    
T  9315189 aaaaatgagtgcagctccattcattatcaattcaaccattcccacaaaccaagcagactaattccatcacaagaaacaagttgagcatcatgtttcagct 9315288  T
Q  230 gc 231  Q
    ||    
T  9315289 gc 9315290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 7117104 - 7117004
Alignment:
Q  105 atctcagacaaatcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaaga 203  Q
    ||||| ||||| |||||| ||| ||||||||||||  || |||||| |||||| ||||||| | |||| |||||||||| |||| |||||||||||||||    
T  7117104 atctcggacaattcaaaatgagagataaaaatgggcacagctccattcattattaattcaaccattccaacaaaccaagatgactaattccatcacaaga 7117005  T
Q  204 a 204  Q
    |    
T  7117004 a 7117004  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 9076740 - 9076642
Alignment:
Q  112 acaaatcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaact 210  Q
    |||| |||||| |||  ||| |||||||||||  ||||| |||||||||||||| ||||||| |||||||||||||| |||| ||||| |||||||||||    
T  9076740 acaattcaaaatgagccatagaaatgggtgcagttccattcattatcaattcaacctttcctgcaaaccaaggtgactaattacatca-aagaaacaact 9076642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10346689 - 10346751
Alignment:
Q  1 atggtgatatgatgatcatgcttgacatgcctatgccaaaatagcttttatcagctccactaa 63  Q
    |||||||||||||| |||||||| ||||||||| || ||||||||||| ||||| ||||||||    
T  10346689 atggtgatatgatgctcatgcttcacatgcctaagcaaaaatagctttgatcagttccactaa 10346751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 9326528 - 9326632
Alignment:
Q  128 gataaaaatgggtgcaactccat-cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaactggatcatcctatttca 226  Q
    |||||||||| ||||| |||||| ||||||| |||||| || ||  ||||||||||  ||| |||||||||||||||||||||| ||  ||||| | |||    
T  9326528 gataaaaatgagtgcagctccattcattatccattcaacctatcgcacaaaccaagcagactaattccatcacaagaaacaacttgagtatcctgtatca 9326627  T
Q  227 gctgc 231  Q
    |||||    
T  9326628 gctgc 9326632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 11425424 - 11425349
Alignment:
Q  157 caattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaactggatcatcctatttcagctgcac 233  Q
    |||||||||||||||  |||||||||||||  |||||| ||||||||||||||| ||  ||||| ||||||||||||    
T  11425424 caattcaaactttccc-caaaccaaggtgattaattccttcacaagaaacaactcgagtatcctgtttcagctgcac 11425349  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 9273159 - 9273253
Alignment:
Q  117 tcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaact 210  Q
    |||||| ||| || |||||||| |||| |||||| |||||||||||||| |||||   |||||||||| ||| |||||||| ||||||| |||||    
T  9273159 tcaaaatgagagacaaaaatggatgcagctccattcattatcaattcaacctttctcgcaaaccaaggagactaattccataacaagaagcaact 9273253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 9291026 - 9291158
Alignment:
Q  81 ttttacacaagagggagaacagtaatctcagacaaa----tcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaaactttcctaca 175  Q
    |||||||||||||||| ||  || |||||||||| |    |||||||||| ||  ||||||| |||| |||| | || ||||||||||| ||| || |||    
T  9291026 ttttacacaagagggataagtgtgatctcagacatacaattcaaaaagagaga--aaaatggatgcagctcctttcaatatcaattcaaccttccccaca 9291123  T
Q  176 aaccaaggtgaccaattccatcacaagaaacaact 210  Q
    ||||||||| || ||||||||||||| ||||||||    
T  9291124 aaccaaggtaactaattccatcacaacaaacaact 9291158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 26573949 - 26574182
Alignment:
Q  1 atggtgatatgatgatcatgcttgacatgcctatgccaaaatagcttttatcagctccactaaaaatagtggtcttccagttttacac------aagagg 94  Q
    |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||  | |  |||||||||||      ||||||    
T  26573949 atggtgatatgatgctcaagcttcacatgcctatgccaaaatagcttttatcagctccattaaaaatagtaatatatcagttttacacacacataagagg 26574048  T
Q  95 gagaacagtaatctcagacaaatcaaaaagagggataaaaatgggtgcaactccatcattatcaattcaaactttcctacaaaccaaggtgaccaattcc 194  Q
    || ||| || |||||||| || ||||||||||||||||||||||||||| ||||||||||| |||||||| ||        |||||||||||| ||||||    
T  26574049 gataactgtgatctcagaaaattcaaaaagagggataaaaatgggtgcacctccatcattaccaattcaacct--------aaccaaggtgactaattcc 26574140  T
Q  195 atcacaagaaacaactggatcatcctatttcagctgcacttc 236  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  26574141 atcacaagaaacaactggagcatcctgtttcagctgcacttc 26574182  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 560542 - 560591
Alignment:
Q  1 atggtgatatgatgatcatgcttgacatgcctatgccaaaatagcttttatca 53  Q
    |||||||||||||| ||||||   |||||||||||||||||||||||||||||    
T  560542 atggtgatatgatgctcatgc---acatgcctatgccaaaatagcttttatca 560591  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 37461496 - 37461618
Alignment:
Q  112 acaaatcaaaaagagggataaaaatgggtgcaactccat-cattatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaact 210  Q
    |||| |||||| |||  ||| ||||| ||||| |||||| |||||||||||||| ||| || ||||||||||| ||| ||||||||||||||||||||||    
T  37461496 acaattcaaaatgagaaatacaaatgcgtgcagctccattcattatcaattcaaccttacccacaaaccaaggagactaattccatcacaagaaacaact 37461595  T
Q  211 ggatcatcctatttcagctgcac 233  Q
     || || ||| ||||||||||||    
T  37461596 tgagcaccctgtttcagctgcac 37461618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 39426178 - 39426215
Alignment:
Q  4 gtgatatgatgatcatgcttgacatgcctatgccaaaa 41  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  39426178 gtgatatgatgctcatgcttcacatgcctatgccaaaa 39426215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 10857043 - 10857004
Alignment:
Q  3 ggtgatatgatgatcatgcttgacatgcctatgccaaaat 42  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  10857043 ggtgatatgatgctcatgctttacatgcctatgccaaaat 10857004  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 29462328 - 29462271
Alignment:
Q  153 ttatcaattcaaactttcctacaaaccaaggtgaccaattccatcacaagaaacaact 210  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||| || ||||||||||    
T  29462328 ttatcaattcaatccttcccacaaaacaaggtgactaattccattactagaaacaact 29462271  T

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