View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2391_low_45 (Length: 243)
Name: NF2391_low_45
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_45 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 28865549 - 28865338
Alignment:
| Q |
22 |
cgagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtgggg-tctcacgcctcacagtccgatattcaatggatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| || ||||||||||| |
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|
| T |
28865549 |
cgagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgcagtgggggtctcacacctcacagtccaatcttcaatggatt |
28865450 |
T |
|
| Q |
121 |
ctggacacaataagagaaagtgagctaaaagatcaacgtcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctagcaag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
28865449 |
ctggacacaataagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctctaactctaacaag |
28865350 |
T |
|
| Q |
221 |
gtctttgatgat |
232 |
Q |
| |
|
||||||| |||| |
|
|
| T |
28865349 |
gtctttgttgat |
28865338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 15329452 - 15329242
Alignment:
| Q |
22 |
cgagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattc |
121 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| || |||||||||||| |
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|
| T |
15329452 |
cgagccacccaacaagcacttgaaaggactcaaattgttcattcttaatagcaatatgcagtggggtctcgcacctcacagtccaatcttcaatggattc |
15329353 |
T |
|
| Q |
122 |
tggacacaataagagaaagtgagctaaaagatcaacgtcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctagcaagg |
221 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
15329352 |
tggacacgagaagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctaacaagg |
15329253 |
T |
|
| Q |
222 |
tctttgatgat |
232 |
Q |
| |
|
|||||| |||| |
|
|
| T |
15329252 |
tctttgttgat |
15329242 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 15509821 - 15509611
Alignment:
| Q |
22 |
cgagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattc |
121 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| || |||||||||||| |
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|
| T |
15509821 |
cgagccacccaacaagcacttgaaaggactcaaattgttcattcttaatagcaatatgcagtggggtctcgcacctcacagtccaatcttcaatggattc |
15509722 |
T |
|
| Q |
122 |
tggacacaataagagaaagtgagctaaaagatcaacgtcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctagcaagg |
221 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15509721 |
tggacacgagaagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctaacaagg |
15509622 |
T |
|
| Q |
222 |
tctttgatgat |
232 |
Q |
| |
|
|||||| |||| |
|
|
| T |
15509621 |
tctttgttgat |
15509611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 14726824 - 14726610
Alignment:
| Q |
23 |
gagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattct |
122 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||| ||||||||||||| ||||||||| |||| ||||| |||| |||||| |||||||||||||| |
|
|
| T |
14726824 |
gagccagccaacaagtacttgaagtgcctcaaactgttcattcttaacagcaatatgcagtgcagtctcctgccttacagtcaagtattcaatggattcc |
14726725 |
T |
|
| Q |
123 |
ggacacaataagagaaagtgagctaaaagatcaacgtcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctagcaaggt |
222 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| |||||| |||| ||||| |||||||||||||||||||| |||| |||| |||||||| |||||| |
|
|
| T |
14726724 |
ggacacaataagagaaagcaaactaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcctttaactctaacaaggt |
14726625 |
T |
|
| Q |
223 |
ctttgatgatgtcca |
237 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
14726624 |
ctttattgatgtcca |
14726610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 30648395 - 30648192
Alignment:
| Q |
23 |
gagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattct |
122 |
Q |
| |
|
|||||| | |||||| ||||||| ||||||| |||||||||| |||| || |||||| |||| ||||| |||||||||||| |||||||| ||||| |
|
|
| T |
30648395 |
gagccagctaacaagtacttgaagggcctcatattgttcatttttaacagaaatatggagtgcagtctcgcgcctcacagtcaagtattcaattgattcc |
30648296 |
T |
|
| Q |
123 |
ggacacaataagagaaagtgagctaaaagatcaacgtcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctagcaaggt |
222 |
Q |
| |
|
|||||||| |||||||| |||||| | | ||| |||||| |||| | |||||||||||||||||||| ||| |||| |||| |||||||| |||||| |
|
|
| T |
30648295 |
ggacacaaacggagaaagtaagctaacatttgaacctcaccattttgacatgcaaaatgaagaggagttatgccttctcttcctctaactctaacaaggt |
30648196 |
T |
|
| Q |
223 |
cttt |
226 |
Q |
| |
|
|||| |
|
|
| T |
30648195 |
cttt |
30648192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 226
Target Start/End: Complemental strand, 26088679 - 26088485
Alignment:
| Q |
32 |
aacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattctggacacaat |
131 |
Q |
| |
|
|||||| ||||||| |||||||| ||| ||||||||| ||||||||| |||| ||||| |||||||||| |||||||| ||||| |||||||| |
|
|
| T |
26088679 |
aacaagtacttgaagagcctcaaactgtccattcttaacagcaatatgcagtgcagtctcgtgcctcacagttaagtattcaatagattccggacacaag |
26088580 |
T |
|
| Q |
132 |
aagagaaagtgagctaaaagatcaacgtcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctagcaaggtcttt |
226 |
Q |
| |
|
|||||||||| ||||| ||| ||| ||||||||||| |||||||||||||||||||||| || |||| |||| ||| |||| |||||||||| |
|
|
| T |
26088579 |
aagagaaagtattctaaatgattaacctcaccaatttgacttgcaaaatgaagaggagttataccttctcttcctttaattctaacaaggtcttt |
26088485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 29552272 - 29552137
Alignment:
| Q |
61 |
cattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattctggacacaataagagaaagtgagctaaaagatcaacgtc |
160 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| | |||||||||| |||||||| ||||| ||||| |||||||| ||||||||| ||||| || |
|
|
| T |
29552272 |
cattattaatagcaatatgaagtgcggtctcgcacctcacagtcaagtattcaatagattcaggacatgcgttgagaaagtaagctaaaaggtcaacctc |
29552173 |
T |
|
| Q |
161 |
accaatttggcttgcaaaatgaagaggagttaagcc |
196 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
29552172 |
tccaatttggcttgcataatgaagaggagtcaagcc |
29552137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 6612051 - 6612219
Alignment:
| Q |
24 |
agccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattctg |
123 |
Q |
| |
|
||||| |||||||| ||| ||| |||||||||||||| |||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
6612051 |
agccagccaacaagtactcgaagggcctcaaattgttgattcttaatagcaatatgcagtgcagtctcgtgcctcacagtcaaatattcaatggattccg |
6612150 |
T |
|
| Q |
124 |
gacacaataagagaaagtgagctaaaagatcaacgtcaccaatttggcttgcaaaatgaagaggagtta |
192 |
Q |
| |
|
||||||| |||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
6612151 |
gacacaacttgagaaatttagctaaaagatcaacctcaccaatttgacttgcaaaatgaagaggagtta |
6612219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 17293999 - 17294082
Alignment:
| Q |
143 |
agctaaaagatcaacgtcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctagcaaggtcttt |
226 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||| ||| ||||| | |||||||||| |
|
|
| T |
17293999 |
agctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagttaagccttctctcccttgaactcgaacaaggtcttt |
17294082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 26087266 - 26087470
Alignment:
| Q |
22 |
cgagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattc |
121 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||| | || |||||||| |||||||||| || | |||||| | |
|
|
| T |
26087266 |
cgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcggtctcacacctcacagtcacatctctaatggaatt |
26087365 |
T |
|
| Q |
122 |
tggacacaataagagaaagtgagctaaaagatcaacgtcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctagcaagg |
221 |
Q |
| |
|
||||| | | ||| || | ||||||||| ||||| || |||||||| |||||||||||||||| ||||||||| |||| |||| ||||||| |||| |
|
|
| T |
26087366 |
aggacatacaaggaggaatttagctaaaaggtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctcttccttgaactctaacaagt |
26087465 |
T |
|
| Q |
222 |
tcttt |
226 |
Q |
| |
|
||||| |
|
|
| T |
26087466 |
tcttt |
26087470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 4819320 - 4819132
Alignment:
| Q |
35 |
aagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattctggacacaataag |
134 |
Q |
| |
|
||||||||||| ||||||| | ||||||||| | | ||||||||| | || |||||| |||||||||| |||||||| ||||| ||||| ||| |
|
|
| T |
4819320 |
aagcacttgaagggcctcatactgttcattcatgacagcaatatgcaatgcagtctcaaacctcacagtcaagtattcaatagattccggacaagcaaag |
4819221 |
T |
|
| Q |
135 |
agaaagtgagctaaaagatcaacgtcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctagcaaggtc |
223 |
Q |
| |
|
||||| | ||||||||| ||||| || |||||||| |||||||||||||||||||||| ||| | || |||| ||||||| ||||||| |
|
|
| T |
4819220 |
agaaaattagctaaaagttcaacctcgccaatttgacttgcaaaatgaagaggagttatgccatttcttccttcaactctaacaaggtc |
4819132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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