View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2391_low_8 (Length: 454)

Name: NF2391_low_8
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2391_low_8
NF2391_low_8
[»] chr1 (5 HSPs)
chr1 (51-190)||(52283513-52283652)
chr1 (302-451)||(52283764-52283911)
chr1 (126-184)||(47398336-47398394)
chr1 (133-184)||(50775047-50775098)
chr1 (135-184)||(33358051-33358100)
[»] chr8 (4 HSPs)
chr8 (134-182)||(6445311-6445359)
chr8 (135-184)||(36568090-36568139)
chr8 (126-184)||(15136080-15136138)
chr8 (128-176)||(32752541-32752589)
[»] chr7 (11 HSPs)
chr7 (121-184)||(2305749-2305812)
chr7 (133-180)||(39497192-39497239)
chr7 (133-184)||(39110992-39111043)
chr7 (126-184)||(46022151-46022209)
chr7 (126-179)||(7701678-7701731)
chr7 (135-184)||(7817765-7817814)
chr7 (134-179)||(32748318-32748363)
chr7 (131-184)||(42553027-42553080)
chr7 (135-184)||(42555693-42555742)
chr7 (134-182)||(20337442-20337490)
chr7 (128-184)||(49069373-49069429)
[»] chr6 (5 HSPs)
chr6 (135-184)||(3832592-3832641)
chr6 (126-184)||(16199579-16199637)
chr6 (138-184)||(26832775-26832821)
chr6 (135-184)||(31749494-31749543)
chr6 (135-184)||(32046827-32046876)
[»] chr3 (12 HSPs)
chr3 (136-181)||(52564543-52564588)
chr3 (133-176)||(30185662-30185705)
chr3 (135-182)||(54007593-54007640)
chr3 (136-182)||(11075270-11075316)
chr3 (126-184)||(21217641-21217699)
chr3 (134-180)||(52418349-52418395)
chr3 (135-184)||(6999299-6999348)
chr3 (133-182)||(11056824-11056873)
chr3 (135-184)||(23183542-23183591)
chr3 (126-179)||(37056941-37056994)
chr3 (133-182)||(45754771-45754820)
chr3 (133-184)||(44891148-44891200)
[»] chr2 (9 HSPs)
chr2 (133-182)||(30339755-30339804)
chr2 (133-182)||(44977390-44977439)
chr2 (126-184)||(3097745-3097803)
chr2 (135-184)||(3012745-3012794)
chr2 (135-184)||(22525889-22525938)
chr2 (135-184)||(23352800-23352849)
chr2 (133-182)||(28494991-28495040)
chr2 (135-184)||(44254730-44254779)
chr2 (134-182)||(39147897-39147945)
[»] chr4 (8 HSPs)
chr4 (133-181)||(1797712-1797760)
chr4 (133-184)||(42491203-42491254)
chr4 (133-184)||(50831646-50831697)
chr4 (126-184)||(38382450-38382508)
chr4 (126-184)||(47181970-47182028)
chr4 (126-184)||(48402081-48402139)
chr4 (126-184)||(56363929-56363987)
chr4 (134-182)||(14603588-14603636)
[»] chr5 (6 HSPs)
chr5 (133-184)||(6596459-6596510)
chr5 (133-168)||(17154425-17154460)
chr5 (126-184)||(17626115-17626173)
chr5 (135-184)||(3640090-3640139)
chr5 (135-184)||(15952938-15952987)
chr5 (135-184)||(41175599-41175648)
[»] scaffold0005 (1 HSPs)
scaffold0005 (134-182)||(213742-213790)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 51 - 190
Target Start/End: Original strand, 52283513 - 52283652
Alignment:
Q  51 gacttatttattcaagaaaaattgtagtatatgacaattacgtgttcattaagaatgtgattatggctcataaaattaagaattgtgttatttgaacgac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||     
T  52283513 gacttatttattcaagaaaaattgtagtatatgacaattacgtgttcattaagaatgtgattatggctcataaaattaagaattgtgttatttaaaagat 52283612  T
Q  151 catttcaatgacaacttatgagacaaccataattacaaag 190  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52283613 catttcaatgacaacttatgagacaaccataattacaaag 52283652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 302 - 451
Target Start/End: Original strand, 52283764 - 52283911
Alignment:
Q  302 catttctctaaaattttaaatatggttgatatgatgataatatttgatatagcacactcgatgaaaagattagtgtagttctttatttcttgcttgccac 401  Q
    |||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  52283764 catttctctaaaatt--aaatatggttgatacgatgataatatttgatatagcaaactcgatgaaaagatcagtgtagttctttatttcttgcttgccac 52283861  T
Q  402 ctttgaacacaggtgaatttggcattccttggtagtgagccttttatttt 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52283862 ctttgaacacaggtgaatttggcattccttggtagtgagccttttatttt 52283911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 47398336 - 47398394
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||| |||||||||||| | ||||||| ||||||||||| | ||||||||||||||    
T  47398336 ttaagaactgtgttatttgagcaaccattttaatgacaactttttagacaaccataatt 47398394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 50775047 - 50775098
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||||||||||||| | |||||| || || |||||||||||||    
T  50775047 ttgtgttatttgaacgaccatttgattgacaaattttgtgacaaccataatt 50775098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 33358051 - 33358100
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| |||||||   |||||||||||| |||||||||||||    
T  33358051 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccataatt 33358100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 6445359 - 6445311
Alignment:
Q  134 tgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||    
T  6445359 tgtgttatttgaacgaccatttgattgacaacttatgggacaaccataa 6445311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 36568139 - 36568090
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| ||||||| | |||||||||||| |||||||||||||    
T  36568139 gtgttatttgaacaaccatttgattgacaacttatgggacaaccataatt 36568090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 15136138 - 15136080
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||| |||||||||||| |||  ||||||||||| |||||||| |||| ||||||||||    
T  15136138 ttaaaaattgtgttattggaagaaccatttcaataacaacttaggagataaccataatt 15136080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 32752589 - 32752541
Alignment:
Q  128 aagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaa 176  Q
    |||| ||||||||||||||| ||||||||||||| || ||||| |||||    
T  32752589 aagagttgtgttatttgaacaaccatttcaatgataatttatgggacaa 32752541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 2305749 - 2305812
Alignment:
Q  121 taaaattaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||| ||||| ||||||||||||||| ||||||||||| | |||||||| ||||| |||||||    
T  2305749 taaaaataagagttgtgttatttgaacaaccatttcaataataacttatgcgacaatcataatt 2305812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 39497192 - 39497239
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccat 180  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||    
T  39497192 ttgtgttatttgaacaaccatttcaatgataacttataagacaaccat 39497239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 39111043 - 39110992
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||||| |  |||| |||||||||||||||||||| |||||||    
T  39111043 ttgtgttatttgaacaattattttaatgacaacttatgagacaatcataatt 39110992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 46022151 - 46022209
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||||| |||||||||||||||  ||||||  |||||||||| ||||||||||| ||||    
T  46022151 ttaagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaatt 46022209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 7701731 - 7701678
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaacca 179  Q
    |||||| |||||||||||||||  ||||||  |||||||||| |||||||||||    
T  7701731 ttaagagttgtgttatttgaacatccatttatatgacaacttttgagacaacca 7701678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 7817814 - 7817765
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| |||||||   |||||||||||| |||||||||||||    
T  7817814 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccataatt 7817765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 32748318 - 32748363
Alignment:
Q  134 tgtgttatttgaacgaccatttcaatgacaacttatgagacaacca 179  Q
    |||||||||||||| |||| |||||||||||||| || ||||||||    
T  32748318 tgtgttatttgaacaaccaattcaatgacaacttttgtgacaacca 32748363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 42553080 - 42553027
Alignment:
Q  131 aattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||||||| ||||||| | ||| ||||| ||||| ||||||||||    
T  42553080 aattgtgttatttgaacaaccatttaattgataacttttgagaaaaccataatt 42553027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 42555742 - 42555693
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| |||||||   ||||||||| ||||||||||||||||    
T  42555742 gtgttatttgaacaaccatttggttgacaacttttgagacaaccataatt 42555693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 20337490 - 20337442
Alignment:
Q  134 tgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    |||||||||||||| || ||||  |||||||||||||||| ||||||||    
T  20337490 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataa 20337442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 49069429 - 49069373
Alignment:
Q  128 aagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||| ||||||||||||||| ||||||| | ||||||||| || |||||| ||||||    
T  49069429 aagagttgtgttatttgaacaaccatttgattgacaacttttgggacaactataatt 49069373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 3832641 - 3832592
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| ||||||| | |||||||||||| |||||||||||||    
T  3832641 gtgttatttgaacaaccatttgattgacaacttatgggacaaccataatt 3832592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 16199637 - 16199579
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||||| |||||||||||||||  ||||||  |||||||||| ||||||||||| ||||    
T  16199637 ttaagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaatt 16199579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 26832821 - 26832775
Alignment:
Q  138 ttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||||||||| ||||||| | |||||||||||| |||||||||||||    
T  26832821 ttatttgaacaaccatttgattgacaacttatgtgacaaccataatt 26832775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 31749543 - 31749494
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| | ||||| | |||||||||| |||||||||||||||    
T  31749543 gtgttatttgaacaatcatttgattgacaacttaagagacaaccataatt 31749494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 32046876 - 32046827
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| |||||||   |||||||||||| |||||||||||||    
T  32046876 gtgttatttgaacaaccatttggttgacaacttatgggacaaccataatt 32046827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 52564543 - 52564588
Alignment:
Q  136 tgttatttgaacgaccatttcaatgacaacttatgagacaaccata 181  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||    
T  52564543 tgttatttgaacaaccatttctatgacaacttatgggacaaccata 52564588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 30185705 - 30185662
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaa 176  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||    
T  30185705 ttgtgttatttgaacaaccatttcaaagacaatttatgagacaa 30185662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 54007640 - 54007593
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    ||||||||||||||||||| |  |||||||||||| ||||||||||||    
T  54007640 gtgttatttgaacgaccatctgtatgacaacttataagacaaccataa 54007593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 11075270 - 11075316
Alignment:
Q  136 tgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    |||||||||||| |||||||  |||||||||| ||||||||||||||    
T  11075270 tgttatttgaacaaccatttgtatgacaacttttgagacaaccataa 11075316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 21217699 - 21217641
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||||| |||||||||||||||  ||||||  |||||||||| ||||||||||| ||||    
T  21217699 ttaagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaatt 21217641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 52418395 - 52418349
Alignment:
Q  134 tgtgttatttgaacgaccatttcaatgacaacttatgagacaaccat 180  Q
    |||||||||||||| |||||||||||||||| ||||  |||||||||    
T  52418395 tgtgttatttgaacaaccatttcaatgacaagttatatgacaaccat 52418349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 6999348 - 6999299
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| |||||||   |||||||||||| |||||||||||||    
T  6999348 gtgttatttgaacaaccatttggttgacaacttatgggacaaccataatt 6999299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 11056824 - 11056873
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    ||||||||||||||| |||||||  || ||||||| ||||||||||||||    
T  11056824 ttgtgttatttgaacaaccatttgtataacaacttttgagacaaccataa 11056873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 23183591 - 23183542
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| ||||||| | ||||||||||| | ||||||||||||    
T  23183591 gtgttatttgaacaaccatttgattgacaacttattatacaaccataatt 23183542  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 37056941 - 37056994
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaacca 179  Q
    |||||| |||||||||||||||  ||||||  |||||||||| |||||||||||    
T  37056941 ttaagagttgtgttatttgaacatccatttatatgacaacttttgagacaacca 37056994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 45754820 - 45754771
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    ||||||||||||||| ||||||| | ||| ||||||| ||||||||||||    
T  45754820 ttgtgttatttgaacaaccatttgattgataacttattagacaaccataa 45754771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 44891148 - 44891200
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgac-aacttatgagacaaccataatt 184  Q
    ||||||||||||||| || ||||||||||| |||||||||||||  |||||||    
T  44891148 ttgtgttatttgaacaacaatttcaatgacaaacttatgagacactcataatt 44891200  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 30339755 - 30339804
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||| |||||    
T  30339755 ttgtgttatttgaacaaccatttaaatgagaacttatgagacaatcataa 30339804  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 44977390 - 44977439
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    ||||||||||||||| ||||||| || || ||||||||||||||||||||    
T  44977390 ttgtgttatttgaacaaccatttgaacgaaaacttatgagacaaccataa 44977439  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 3097745 - 3097803
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||||| |||||||||||||||  ||||||  |||||||||| ||||||||||| ||||    
T  3097745 ttaagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaatt 3097803  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 3012745 - 3012794
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| |||||||   |||||||||||| |||||||||||||    
T  3012745 gtgttatttgaacaaccatttggttgacaacttatgggacaaccataatt 3012794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 22525889 - 22525938
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| ||||||| | ||| ||||| ||||||||||||||||    
T  22525889 gtgttatttgaacaaccatttgattgataacttttgagacaaccataatt 22525938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 23352800 - 23352849
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| |||||||   |||||||||||| |||||||||||||    
T  23352800 gtgttatttgaacaaccatttggttgacaacttatgggacaaccataatt 23352849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 28495040 - 28494991
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    ||||||||||||||| ||||||| ||| ||||||| || |||||||||||    
T  28495040 ttgtgttatttgaacaaccatttaaattacaacttttgtgacaaccataa 28494991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 44254779 - 44254730
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| ||||||| | |||||||||||| || ||||||||||    
T  44254779 gtgttatttgaacaaccatttgattgacaacttatgggataaccataatt 44254730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 39147945 - 39147897
Alignment:
Q  134 tgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    |||||||||||||| ||||||| ||||||||||| || ||||| |||||    
T  39147945 tgtgttatttgaacaaccattttaatgacaacttttgggacaatcataa 39147897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 1797712 - 1797760
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccata 181  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||| ||||    
T  1797712 ttgtgttatttgaactaccatttgaatgacaacttacgagacaatcata 1797760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 42491254 - 42491203
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||||| ||||||| | ||||||||| || |||||||||||||    
T  42491254 ttgtgttatttgaacaaccatttgattgacaacttttgggacaaccataatt 42491203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 50831646 - 50831697
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||||| ||||||| | ||||||||| || |||||||||||||    
T  50831646 ttgtgttatttgaacaaccatttgattgacaacttttgggacaaccataatt 50831697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 38382508 - 38382450
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||||| |||||||||||||||  ||||||  |||||||||| ||||||||||| ||||    
T  38382508 ttaagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaatt 38382450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 47182028 - 47181970
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||||| |||||||||||||||  ||||||  |||||||||| ||||||||||| ||||    
T  47182028 ttaagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaatt 47181970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 48402081 - 48402139
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||||| |||||||||||||||  ||||||  |||||||||| ||||||||||| ||||    
T  48402081 ttaagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaatt 48402139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 56363929 - 56363987
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||||| |||||||||||||||  ||||||  |||||||||| ||||||||||| ||||    
T  56363929 ttaagagttgtgttatttgaacatccatttacatgacaacttttgagacaaccaaaatt 56363987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 14603636 - 14603588
Alignment:
Q  134 tgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    |||||||||||||| | |||||| ||||||| || ||||||||||||||    
T  14603636 tgtgttatttgaacaatcatttccatgacaatttttgagacaaccataa 14603588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 6596510 - 6596459
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||||||||||||||||| |||| ||||| || || |||||||    
T  6596510 ttgtgttatttgaacgaccatttcaattacaatttatgggataatcataatt 6596459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 17154425 - 17154460
Alignment:
Q  133 ttgtgttatttgaacgaccatttcaatgacaactta 168  Q
    ||||||||||||||| ||||||||||||||||||||    
T  17154425 ttgtgttatttgaacaaccatttcaatgacaactta 17154460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 17626173 - 17626115
Alignment:
Q  126 ttaagaattgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    |||||| |||||||||||||||  ||||||  |||||||||| ||||||||||| ||||    
T  17626173 ttaagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaatt 17626115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 3640090 - 3640139
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| |||||||   |||||||||||| |||||||||||||    
T  3640090 gtgttatttgaactaccatttagttgacaacttatgtgacaaccataatt 3640139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 15952938 - 15952987
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| |||||||   |||||||||||| |||||||||||||    
T  15952938 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccataatt 15952987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 41175599 - 41175648
Alignment:
Q  135 gtgttatttgaacgaccatttcaatgacaacttatgagacaaccataatt 184  Q
    ||||||||||||| |||||||   |||||||||||| |||||||||||||    
T  41175599 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccataatt 41175648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 213742 - 213790
Alignment:
Q  134 tgtgttatttgaacgaccatttcaatgacaacttatgagacaaccataa 182  Q
    |||||||||||||| | |||||| ||||||| || ||||||||||||||    
T  213742 tgtgttatttgaacaatcatttccatgacaatttttgagacaaccataa 213790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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