View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_low_9 (Length: 438)
Name: NF2391_low_9
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 52987478 - 52987900
Alignment:
| Q |
14 |
gaaggttaaaagtgtgattaggtctagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaannnnnnnnnnnnnngacatccttagc |
113 |
Q |
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| T |
52987478 |
gaaggttaaaagtgtgattaggcttagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaattttttatttttttgacatccttagc |
52987577 |
T |
|
| Q |
114 |
tccaatctnnnnnnnnnnnnnnn-ggcaagatgcactaaacaaagaaatgtttgcataaaaaactatcatctattcatcccacaattctggtccctgtat |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52987578 |
tccaatctaaaaaaaaaaaaaaaaggcaagatgcactaaacaaagaaatgtttgcataaaaaactatcatctattcatcccacaattctggtccctgtat |
52987677 |
T |
|
| Q |
213 |
caagatcaagatgttgtagcctattaaatataaccaattgcaattatttatttaaagtt--------------ttccatatggtaaacattaatgtgcat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
52987678 |
caagatcaagatgttgtagcctattaaatataaccaattgcaattatttatttaaagttttccatatttgttattccatatggtaaacattaatttgcat |
52987777 |
T |
|
| Q |
299 |
aaacaagattgctaactttgttgcttatgctgcctggagtcagttacacctattctgtaacaatttctgataaacctacaaaactaccagcccctgaatg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52987778 |
aaacaagattgctaactttgttgcttatgctgcctggagtcagttacacctattctgtaacaatttctgataaacctacgaaactaccagcccctgaatg |
52987877 |
T |
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| Q |
399 |
tccatgcctgccacagcattcct |
421 |
Q |
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||||||||||||||||||||||| |
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| T |
52987878 |
tccatgcctgccacagcattcct |
52987900 |
T |
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