View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2392_high_1 (Length: 475)
Name: NF2392_high_1
Description: NF2392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2392_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 26615881 - 26615434
Alignment:
| Q |
18 |
aatttgtccattctactgtggaaattaatttgcttaatgcgtgctccttttctttttctattattttggtgtaattatcatttgtgtttgctactttgaa |
117 |
Q |
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| T |
26615881 |
aatttgtccattctactgtggaaattaatttgcttaatgcgtgctccttttctttttctattattttggtgtaattatcatttgtgtttgctactttgaa |
26615782 |
T |
|
| Q |
118 |
tctttattagagaagactaaagaggaatatctgtttacattttgataaaaaagttgacatggtttcttcatttgatttgtagagagtattttggcgaggc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615781 |
tctttattagagaagactaaagaggaatatctgtttacatattgataaaaaagttgacatggtttcttcatttgatttgtagagagtattttggcgaggc |
26615682 |
T |
|
| Q |
218 |
gttgttgaagagcttctttggtttatcagtggctcaacaagtgccaaggtaatgatataattttccaatcttttcacacatgtcggcacacaagtgatan |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26615681 |
gttgttgaagagcttctttggtttatcagtggctcaacaagtgccaaggtaatgatataattttccaatcttttcacacatgttggcacacaagtgatat |
26615582 |
T |
|
| Q |
318 |
nnnnnnagttaggttacaattcacacactagctggcatgggccaaatgttggggaacttgaggttggtgtacttgatattatttgaacagtcgagcttag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615581 |
ttttttagttaggttacaattcacacactagctggcatgggccaaatgttggggaacttgaggttggtgtacttgatattatttgaacagtcgagcttag |
26615482 |
T |
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| Q |
418 |
gttttaatataggtaaacttgtggcttgggttatatagtttgatgatg |
465 |
Q |
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| T |
26615481 |
gttttaatataggtaaacttgtggcttgggttatatagtttgatgatg |
26615434 |
T |
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Back To:
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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 54759019 - 54758905
Alignment:
| Q |
156 |
attttgataaaaaagttgacatggtttcttcatttgatttgtagagagtattttggcgaggcgttgttgaagagcttctttggtttatcagtggctcaac |
255 |
Q |
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||||||||||| ||||||| ||| | | | |||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
54759019 |
attttgataaagaagttgaaatgatctttgcatttggttgctagagagtattttggcgaggggttgttgaagagcttctttggtttatcagcggctcaac |
54758920 |
T |
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| Q |
256 |
aagtgccaaggtaat |
270 |
Q |
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|| |||||||||||| |
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| T |
54758919 |
aaatgccaaggtaat |
54758905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 5317760 - 5317646
Alignment:
| Q |
156 |
attttgataaaaaagttgacatggtttcttcatttgatttgtagagagtattttggcgaggcgttgttgaagagcttctttggtttatcagtggctcaac |
255 |
Q |
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||||||||||| ||||||| ||| | | | |||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
5317760 |
attttgataaagaagttgaaatgatctttgcatttggttgctagagagtattttggcgaggggttgttgaagagcttctttggtttatcagcggctcaac |
5317661 |
T |
|
| Q |
256 |
aagtgccaaggtaat |
270 |
Q |
| |
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|| ||| |||||||| |
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| T |
5317660 |
aaatgctaaggtaat |
5317646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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