View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2392_high_8 (Length: 237)
Name: NF2392_high_8
Description: NF2392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2392_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 828810 - 828590
Alignment:
| Q |
1 |
caaagctgcagagctcaaacacgtgcttgccatgctggatgatttctcatctcaagaacttggtgctaagattaaggtgtatggtatcaccgctcctgaa |
100 |
Q |
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| T |
828810 |
caaagctgcagagctcaaacacgtgcttgccatgctggatgatttctcatctcaagaacttggtgctaagattaaggagtatggtatcaccgctcctgaa |
828711 |
T |
|
| Q |
101 |
acgaagaacccgctctctcatccttacccattcaatttgatgtttcaaacttccattggtccctccggcttagctcctgggttagtagtcacttccattg |
200 |
Q |
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| T |
828710 |
acgaagaacccactctctcatccttacccattcaatttgatgtttcaaacttccattggtccctccggcttagctcctgggttagtagtcacttccattg |
828611 |
T |
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| Q |
201 |
tgaattatgattattattatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
828610 |
tgaattatgattattattatc |
828590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 835179 - 834986
Alignment:
| Q |
2 |
aaagctgcagagctcaaacacgtgcttgccatgctggatgatttctcatctcaagaacttggtgctaagattaaggtgtatggtatcaccgctcctgaaa |
101 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
835179 |
aaagctgcagagctgaaacacgtgcttgccatgctggatggtttctcatctcaagaacttggtgctaagattaaggagtatggtatcactgctcctgaaa |
835080 |
T |
|
| Q |
102 |
cgaagaacccgctctctcatccttacccattcaatttgatgtttcaaacttccattggtccctccggcttagctcctgggttagtagtcacttc |
195 |
Q |
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| T |
835079 |
ccaagaacccactctctgatccttaccctttcaatttgatgtttcaaacttccattggtccctccggctcagctcgtgggttagtagtcgcttc |
834986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 941160 - 940978
Alignment:
| Q |
1 |
caaagctgcagagctcaaacacgtgcttgccatgctggatgatttctcatctcaagaacttggtgctaagattaaggtgtatggtatcaccgctcctgaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
941160 |
caaagctgcagagctcaagcacgtgcttgccatgctggacgatttctcatctcaagaacttggtgctaagattaaggagtatggtatcacagctcctgaa |
941061 |
T |
|
| Q |
101 |
acgaagaacccgctctctcatccttacccattcaatttgatgtttcaaacttccattggtccctccggcttagctcctgggtt |
183 |
Q |
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|| ||||| || || ||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
941060 |
accaagaatccactgtctgatccttaccctttcaatttgatgtttcaaacttcaattggtccctctggcttagctcctgggtt |
940978 |
T |
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