View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2392_low_12 (Length: 217)
Name: NF2392_low_12
Description: NF2392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2392_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 829372 - 829191
Alignment:
| Q |
8 |
aaattattcttctcaggaaggaacaaatagtagcattattgcagagttagaatttatacaagtagttattattccatgatacaatatttagaagatagcg |
107 |
Q |
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| T |
829372 |
aaattattcttctcgggaaggaacaaatagtagcattattgcagagttagaatttatacaagtagttattattccatgatacaatatttagaagatagcg |
829273 |
T |
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| Q |
108 |
ttctagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgtagattattcctatgggccaat |
189 |
Q |
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| T |
829272 |
ttctagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgtagattattcctatgggccaat |
829191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 21202239 - 21202297
Alignment:
| Q |
111 |
tagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgta |
169 |
Q |
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| T |
21202239 |
tagcatagtggaatttgaacaaacttctttttctgcgatccacaatttacaacactgta |
21202297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 42201063 - 42201121
Alignment:
| Q |
111 |
tagcgtagtagaatttgagcaaactactatttctacgatccacaattgacaacactgta |
169 |
Q |
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| T |
42201063 |
tagcatagtggaatttgaacaaacttctttttctgcgatccacaatttacaacactgta |
42201121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 37985029 - 37985061
Alignment:
| Q |
114 |
cgtagtagaatttgagcaaactactatttctac |
146 |
Q |
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| T |
37985029 |
cgtagtagaatttgagcaaactgctatttctac |
37985061 |
T |
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