View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2392_low_13 (Length: 211)
Name: NF2392_low_13
Description: NF2392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2392_low_13 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 172581 - 172753
Alignment:
| Q |
22 |
gagaaaatcaaaattgaaaggacaaaacctttcgttacattatatggggcacccggaaatatgcccaatttaacatatggtggaactgcaaaacaatatg |
121 |
Q |
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| T |
172581 |
gagaaaatcaaaattgataggacaaaacctttcgttacattatatggggcacccggaaatatgccaaatttaacatatggtggaactgcaaaacaatatg |
172680 |
T |
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| Q |
122 |
gcacagttgatagtgctacattgattgctgaatcagattattttgtagctgctaacatcgttgtatcggtttg |
194 |
Q |
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| T |
172681 |
gcacagttgatagtgctacattgattgccgaatcagattattttgtagctgctaacatcctcgtatcggtttg |
172753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 178094 - 178266
Alignment:
| Q |
22 |
gagaaaatcaaaattgaaaggacaaaacctttcgttacattatatggggcacccggaaatatgcccaatttaacatatggtggaactgcaaaacaatatg |
121 |
Q |
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| T |
178094 |
gagaaaatcaaaattgataggacaaaacctttcgttacattatatggggcacccggaaatatgccaaatttaacatatggtggaactgcaaaacaatatg |
178193 |
T |
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| Q |
122 |
gcacagttgatagtgctacattgattgctgaatcagattattttgtagctgctaacatcgttgtatcggtttg |
194 |
Q |
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| T |
178194 |
gcacagttgatagtgctacattgattgccgaatcagattattttgtagctgctaacatcctcgtatcggtttg |
178266 |
T |
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Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 28285021 - 28284864
Alignment:
| Q |
22 |
gagaaaatcaaaattgaaaggacaaaacctttcgttacattatatggggcacccggaaatatgcccaatttaacatatggtggaactgcaaaacaatatg |
121 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||| |||| | ||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
28285021 |
gagaaaatcaaaattgaaaggacaaaaccttttgttacattgtatgggacaccagcaaatatgccaaatttgacatatggtggaactgcaaaacaatatg |
28284922 |
T |
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| Q |
122 |
gcacagttgatagtgctacattgattgctgaatcagattattttgtagctgctaacat |
179 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28284921 |
gcacggttgatagtgctacattgattgttgaatcagattattttgtagctgctaacat |
28284864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 31115446 - 31115280
Alignment:
| Q |
14 |
attatactgagaaaatcaaaattgaaaggacaaaacctttcgttacattatatggggcacccggaaatatgcccaatttaacatatggtggaactgcaaa |
113 |
Q |
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|||||| ||||||||| |||||||| |||||||||||||| |||||||| |||| ||||| |||| |||||| ||| |||| | |||||| |||||| |
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| T |
31115446 |
attataatgagaaaattaaaattgagaggacaaaaccttttgttacattgtatgcagcaccaggaactatgccaaatataacctttggtggcactgcagc |
31115347 |
T |
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| Q |
114 |
acaatatggcacagttgatagtgctacattgattgctgaatcagattattttgtagctgctaacatc |
180 |
Q |
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| T |
31115346 |
aaaatatggcacagttgatagtgctacattgattgttgaatcagattattttgtagctgctaacatc |
31115280 |
T |
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