View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2392_low_2 (Length: 386)
Name: NF2392_low_2
Description: NF2392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2392_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 122941 - 122577
Alignment:
| Q |
14 |
caccattacctaacaaattaaaacaatttcccacagagaaactacatttccaataaatcactttgatctccacaattccggccacctcaaacaatagtat |
113 |
Q |
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| T |
122941 |
caccattacctaacaaattaaaacaatttcccgcggacaaactccatttccaataaatcactttgatctctacaattccggccacctcaaacaatagtat |
122842 |
T |
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| Q |
114 |
gccaaattaaccaaaaatcttttttccactttttaattaaagcacctccgatcaaacattcaagttgaacaaaagagttcggaggggtg--ataacacct |
211 |
Q |
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| T |
122841 |
gccaaattaaccaaaaatcttttttccactttttaattaaagcacctccgatcaaacattcaagttgaacaaaagagttcggaggggtgatataacacct |
122742 |
T |
|
| Q |
212 |
atccatcaaaagattttagaccacctccatcgaagatttttaattaaatcacttctagcctccacctccatcgaagaaagatttcgaacctctcctttga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
122741 |
atccatcaaaagattttagaccacctccatcgaagatttttaattaaatcacttctagcctccatctccatcgaagaaagatttcgaacctctcttttga |
122642 |
T |
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| Q |
312 |
catcaatctctttaatttcatcaactatctccaatgccctattctccaaccgtccatactcatct |
376 |
Q |
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|||||| |||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| |
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| T |
122641 |
catcaaactctttaatttcatcaactatccccaataccctactctccaaccatccatactcatct |
122577 |
T |
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