View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2392_low_6 (Length: 279)

Name: NF2392_low_6
Description: NF2392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2392_low_6
NF2392_low_6
[»] chr3 (2 HSPs)
chr3 (1-264)||(9344423-9344686)
chr3 (4-233)||(9448910-9449139)
[»] chr1 (1 HSPs)
chr1 (105-193)||(18991921-18992009)
[»] chr6 (9 HSPs)
chr6 (101-189)||(7047470-7047564)
chr6 (100-192)||(7026420-7026512)
chr6 (107-189)||(7042124-7042209)
chr6 (126-192)||(7013484-7013550)
chr6 (1-47)||(7030554-7030600)
chr6 (4-42)||(7042268-7042306)
chr6 (1-47)||(9158765-9158811)
chr6 (1-47)||(9171617-9171663)
chr6 (66-162)||(9171499-9171595)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 9344686 - 9344423
Alignment:
Q  1 cccaatcatcataacattttaccctttaagttcccactcctcaaattctcaaacacatatagcattgacattgattccatcaacaacaaagacaatactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9344686 cccaatcatcataacattttaccctttaagttcccactcctcaaattctcaaacacatatagcattgacattgattccatcaacaacaaagacaatactt 9344587  T
Q  101 cattttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaattgtccaaaa 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9344586 cattttgttacctcttcaaaaacattatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaattatccaaaa 9344487  T
Q  201 ctcatttggaaatacccaactgcatcatccactgtctctgactgactcatgtgacccttttcat 264  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9344486 ctcatttggaaatacccaactgcatcatccactgtctgtgactgactcatgtgacccttttcat 9344423  T

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Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 9449139 - 9448910
Alignment:
Q  4 aatcatcataacattttaccctttaagttcccactcctcaaattctcaaacacatatagcattgacattgattccatcaacaacaaagacaatacttcat 103  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| |||| |||| ||| || ||||||||||||||||| |||||||| ||||| |    
T  9449139 aatcatcataacattttacccttcaaattcccactcctcaaattctcatacacctatatcatcgatattgattccatcaacaataaagacaacacttcct 9449040  T
Q  104 tttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaattgtccaaaactc 203  Q
    ||||| ||||||  ||||||| |||||||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||||| |||    
T  9449039 tttgtcacctctcaaaaaacaatatcttcctcatcaaaccaaaacaacaacaacaataccaaaccctaggcccttggttgataagaattgtccaaagctc 9448940  T
Q  204 atttggaaatacccaactgcatcatccact 233  Q
    | ||||||| |||||||||||||| |||||    
T  9448939 aattggaaaaacccaactgcatcacccact 9448910  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 18992009 - 18991921
Alignment:
Q  105 ttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaattg 193  Q
    ||||||||||| |||| |||  ||||||||||||||||||   || ||| ||||| |||||||||| || ||||||||||| |||||||    
T  18992009 ttgttacctctccaaacacaacatcttcctcatcaaaccacctcaacaagaacaacaacaaaccctccgtccttggttgatcagaattg 18991921  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 7047564 - 7047470
Alignment:
Q  101 cattttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaaga---acaaacccta---cgcccttggttgataaga 189  Q
    |||| ||| |||||| |||| | | |||||||||||||||||||  |||||||||||||||   ||||||||||   ||||||||||||||||||    
T  7047564 cattctgtcacctctccaaacaaaatatcttcctcatcaaaccaccacagcaacaacaagaacaacaaaccctacttcgcccttggttgataaga 7047470  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 7026512 - 7026420
Alignment:
Q  100 tcattttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaatt 192  Q
    |||||||||||| ||  |||| | | |||||||||||||||||||  ||| ||| |||||   | |||||||||||||| |||||||||||||    
T  7026512 tcattttgttacatcaccaaacaaaatatcttcctcatcaaaccaccacaacaagaacaaaccctaaccctacgccctttgttgataagaatt 7026420  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 7042209 - 7042124
Alignment:
Q  107 gttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaacaaacccta---cgcccttggttgataaga 189  Q
    ||||||||| |||| | | | |||||||||||||||||  ||| ||||||||| ||||||| |||   ||||||||||||||||||    
T  7042209 gttacctctccaaacataatttcttcctcatcaaaccaccacaacaacaacaacaacaaactctacttcgcccttggttgataaga 7042124  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 7013550 - 7013484
Alignment:
Q  126 tatcttcctcatcaaaccaaaacagcaacaacaagaacaaaccctacgcccttggttgataagaatt 192  Q
    |||||||||||||||||||  ||||||| |||||   | || ||||||||||| |||||||||||||    
T  7013550 tatcttcctcatcaaaccaccacagcaagaacaaaccctaaacctacgcccttcgttgataagaatt 7013484  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7030600 - 7030554
Alignment:
Q  1 cccaatcatcataacattttaccctttaagttcccactcctcaaatt 47  Q
    |||||||||||| | ||||||||||| |||||| |||||||||||||    
T  7030600 cccaatcatcatcaaattttacccttcaagttctcactcctcaaatt 7030554  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 7042306 - 7042268
Alignment:
Q  4 aatcatcataacattttaccctttaagttcccactcctc 42  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  7042306 aatcatcatcacattttacccttcaagttcccactcctc 7042268  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9158765 - 9158811
Alignment:
Q  1 cccaatcatcataacattttaccctttaagttcccactcctcaaatt 47  Q
    ||||||||||||  ||||| |||||| ||||||||||||||||||||    
T  9158765 cccaatcatcatcccatttcacccttcaagttcccactcctcaaatt 9158811  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9171663 - 9171617
Alignment:
Q  1 cccaatcatcataacattttaccctttaagttcccactcctcaaatt 47  Q
    ||||||||||||  ||||| |||||| ||||||||||||||||||||    
T  9171663 cccaatcatcatcccatttcacccttcaagttcccactcctcaaatt 9171617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 9171595 - 9171499
Alignment:
Q  66 tgacattgattccatcaacaacaaagacaatacttcattttgttacctcttcaaaaacactatcttcctcatcaaaccaaaacagcaacaacaagaa 162  Q
    |||||||||| ||||||||| |||  |||| |||||||| |||||||||  |||| | | | ||| ||||||| |||||  ||| ||||||||||||    
T  9171595 tgacattgataccatcaacagcaacaacaacacttcattctgttacctcaccaaacaaaatctctacctcatccaaccaccacaacaacaacaagaa 9171499  T

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