View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2392_low_7 (Length: 278)

Name: NF2392_low_7
Description: NF2392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2392_low_7
NF2392_low_7
[»] chr2 (3 HSPs)
chr2 (93-263)||(43104041-43104213)
chr2 (19-95)||(43104244-43104324)
chr2 (196-250)||(43107280-43107334)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 43104213 - 43104041
Alignment:
Q  93 ataaaatcacatcttatcatatagatatttgtaannnnnnnn--ctttctattgacacatttctccccctcgaatgacaaacagggaaaggtgatggaaa 190  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43104213 ataaaatcacatcttatcatatagatatttgtaattttttttttctttctattgacacatttctccccctcgaatgacaaacagggaaaggtgatggaaa 43104114  T
Q  191 tgtttcaaaattcacttgatgatgaaggaaagaagaaaatcatctacttaggagatggaagtggagacttttg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43104113 tgtttcaaaattcacttgatgatgaaggaaagaagaaaatcatctacttaggagatggaagtggagacttttg 43104041  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 43104324 - 43104244
Alignment:
Q  19 atacttcatgttatgtagagctagagcagcttctatattgagttaatatac----ttttaactttataaaataaaaatata 95  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  43104324 atacttcatgctatgtagagctagagcagcttctatattgagttaatatactttgttttaactttataaaataaaaatata 43104244  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 43107334 - 43107280
Alignment:
Q  196 caaaattcacttgatgatgaaggaaagaagaaaatcatctacttaggagatggaa 250  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  43107334 caaaattcacttgatgatgaaggaaagaagaaattcatctacctagaagatggaa 43107280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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