View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2392_low_8 (Length: 270)

Name: NF2392_low_8
Description: NF2392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2392_low_8
NF2392_low_8
[»] chr3 (4 HSPs)
chr3 (27-180)||(51144534-51144686)
chr3 (27-181)||(20894273-20894426)
chr3 (194-239)||(3696436-3696483)
chr3 (194-239)||(17476018-17476067)
[»] chr4 (17 HSPs)
chr4 (54-172)||(48031687-48031804)
chr4 (27-180)||(30309917-30310070)
chr4 (27-180)||(8934587-8934723)
chr4 (104-181)||(19113903-19113979)
chr4 (114-180)||(19644476-19644541)
chr4 (116-180)||(49926531-49926594)
chr4 (114-181)||(23118920-23118986)
chr4 (114-181)||(23657157-23657223)
chr4 (114-173)||(33988358-33988416)
chr4 (122-180)||(7472893-7472950)
chr4 (27-95)||(23657226-23657294)
chr4 (27-83)||(33988287-33988343)
chr4 (27-95)||(19644544-19644612)
chr4 (27-89)||(23118995-23119057)
chr4 (194-239)||(3735804-3735853)
chr4 (27-75)||(7472980-7473028)
chr4 (194-239)||(47526627-47526676)
[»] chr6 (10 HSPs)
chr6 (24-181)||(5086539-5086695)
chr6 (27-180)||(33019450-33019602)
chr6 (114-181)||(504121-504187)
chr6 (114-181)||(8263730-8263796)
chr6 (118-181)||(15644220-15644282)
chr6 (114-181)||(19226998-19227064)
chr6 (27-95)||(8263799-8263867)
chr6 (27-83)||(504050-504106)
chr6 (27-83)||(19227079-19227135)
chr6 (27-83)||(33639483-33639539)
[»] chr1 (16 HSPs)
chr1 (27-181)||(7178354-7178507)
chr1 (27-181)||(34709434-34709591)
chr1 (27-180)||(25505512-25505648)
chr1 (27-181)||(24314504-24314641)
chr1 (194-239)||(21443245-21443294)
chr1 (194-239)||(29019174-29019223)
chr1 (194-239)||(4652472-4652521)
chr1 (194-239)||(5943146-5943195)
chr1 (194-239)||(10787749-10787798)
chr1 (194-239)||(19082068-19082117)
chr1 (194-239)||(19129956-19130005)
chr1 (194-239)||(20582491-20582540)
chr1 (194-239)||(22867777-22867826)
chr1 (194-239)||(23616006-23616055)
chr1 (194-239)||(23647337-23647386)
chr1 (194-239)||(40374996-40375045)
[»] chr8 (6 HSPs)
chr8 (27-181)||(13909096-13909249)
chr8 (27-95)||(36319009-36319077)
chr8 (114-180)||(4988655-4988720)
chr8 (114-180)||(36319080-36319145)
chr8 (27-83)||(4988584-4988640)
chr8 (194-239)||(41529588-41529637)
[»] chr2 (5 HSPs)
chr2 (27-180)||(15017144-15017297)
chr2 (27-181)||(5325231-5325380)
chr2 (114-180)||(10978595-10978660)
chr2 (194-239)||(23865682-23865731)
chr2 (194-239)||(24079769-24079816)
[»] chr7 (18 HSPs)
chr7 (27-180)||(21439428-21439580)
chr7 (114-180)||(25923556-25923621)
chr7 (27-180)||(45987534-45987671)
chr7 (102-180)||(6970402-6970479)
chr7 (27-181)||(34519123-34519260)
chr7 (99-181)||(33796958-33797043)
chr7 (27-83)||(6970570-6970626)
chr7 (129-181)||(14053994-14054045)
chr7 (129-181)||(14364022-14364073)
chr7 (27-95)||(17804499-17804567)
chr7 (27-95)||(25923624-25923692)
chr7 (98-180)||(2009408-2009492)
chr7 (114-181)||(17804433-17804496)
chr7 (194-239)||(6496483-6496532)
chr7 (194-239)||(32985326-32985375)
chr7 (194-239)||(38433398-38433445)
chr7 (194-239)||(39778717-39778766)
chr7 (194-239)||(47396365-47396414)
[»] chr5 (9 HSPs)
chr5 (27-116)||(22095769-22095858)
chr5 (27-172)||(11575211-11575356)
chr5 (121-181)||(22095893-22095952)
chr5 (27-84)||(5415666-5415723)
chr5 (147-180)||(5415730-5415763)
chr5 (198-239)||(6829162-6829205)
chr5 (194-239)||(7784151-7784200)
chr5 (194-239)||(16467293-16467342)
chr5 (194-239)||(19263254-19263303)
[»] scaffold0108 (2 HSPs)
scaffold0108 (114-181)||(10393-10459)
scaffold0108 (27-82)||(10475-10530)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 51144686 - 51144534
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||||||| ||||| | |||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| ||||||| ||||||    
T  51144686 tggtggtcaagccctttacaatgtctgggtattggctaatttggttttgttgttgtaaagactactgaactttgttgtttcttgaggagtcttggtggca 51144587  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    || ||||||||| || ||||||| |||||| |||||||||||||||||||||||    
T  51144586 cgtcttgtgctaatg-agactctggttgtttatataattccattttttattgtt 51144534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 20894273 - 20894426
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||||||| ||||||| |||||||||| || |||||| |||||||||  || | ||    | || |||||||||||||||||||| ||||    
T  20894273 tggtggtcaagccctttacaatgtttgggtattggctgagatggtttcgttgttgtactgacttctactttttggtgtttcttgacgagtctttgaggca 20894372  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  20894373 cgccttatgctaatga-gactcttgttgttaatataattccatttttaattgttc 20894426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 3696483 - 3696436
Alignment:
Q  194 taacacaaattcttaaaagttaattttat--tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||    
T  3696483 taacacaaattcctaaaagttaattttattatatgtgttaatattttt 3696436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 17476018 - 17476067
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  17476018 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 17476067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 48031687 - 48031804
Alignment:
Q  54 ggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggcacgccttgtgctattgaagactcttgtt 153  Q
    |||||||||||||||||||||||||||||| | | | ||||||| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  48031687 ggtattggctaagttggttttgttgttgtagatactcctgaactttgctgtttcttgactagtctttgtggcacgccttgtgctattg-agactcttgtt 48031785  T
Q  154 gttaatataattccatttt 172  Q
    |||||||||||||||||||    
T  48031786 gttaatataattccatttt 48031804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 30310070 - 30309917
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgttt-cttgacgagtctttgtggc 125  Q
    |||||||||| ||||||| ||||||| | |||||||| ||||||| | |||||||||| || | ||    | || ||||| ||||||||||||||| |||    
T  30310070 tggtggtcaaaccctttacaatgtttggatattggctgagttggtgtcgttgttgtattgacttctactttttggtgttttcttgacgagtctttgaggc 30309971  T
Q  126 acgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    |||||||||||||  || |||||||||||||||||||||||||||||| ||||||    
T  30309970 acgccttgtgctaacga-gactcttgttgttaatataattccatttttgattgtt 30309917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 8934723 - 8934587
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||| |                |||||||||||||    
T  8934723 tggtggtcaaacccgttataatgtttgggtattggctaacttggttttgttgttgtacagaattctgaagt----------------agtctttgtggca 8934640  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    || ||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  8934639 cgtcttgtgctattga-gactattgttgttaatataattccatttttgattgtt 8934587  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 19113979 - 19113903
Alignment:
Q  104 tttcttgacgagtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |||||||||||||||||| |||| ||||||||||| |||  ||||||||||||||||||||||||||||| |||||||    
T  19113979 tttcttgacgagtctttgaggcatgccttgtgctaatgac-actcttgttgttaatataattccatttttgattgttc 19113903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 19644541 - 19644476
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  19644541 agtctttgtggcacatcttgtgctattga-gactcttgttgttaatataattccatttttgattgtt 19644476  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 49926531 - 49926594
Alignment:
Q  116 tctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||    
T  49926531 tctttgtggcacgtcttgtgctaatga-gactcttgttgttaatataattctattttttattgtt 49926594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 23118986 - 23118920
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  23118986 agtcttggtggcacgtcttgtgctattga-gactcttgttgttaatataatcccatttttgattgttc 23118920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 23657223 - 23657157
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  23657223 agtcttggtggcacgtcttgtgctattga-gactcttgttgttaatataatcccatttttaattgttc 23657157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 33988358 - 33988416
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttt 173  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||    
T  33988358 agtctttgtggcacgtcttgtgctaatga-gactcttgttgttaatataattccattttt 33988416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 7472950 - 7472893
Alignment:
Q  122 tggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  7472950 tggcacgtcttgtgctattga-gactcttgttattaatataattccattttttattgtt 7472893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 23657294 - 23657226
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaa 95  Q
    |||||||||| ||| ||| ||||| |||||||||||||  ||||||||||||||||| ||||| |||||    
T  23657294 tggtggtcaaacccgttacaatgtctaggtattggctagcttggttttgttgttgtacagaattctgaa 23657226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 33988287 - 33988343
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgta 83  Q
    |||||||||| ||| ||| ||||||| |||||||||||| |||||||||||||||||    
T  33988287 tggtggtcaaacccgttacaatgtttgggtattggctaacttggttttgttgttgta 33988343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 19644612 - 19644544
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaa 95  Q
    |||||||||| ||| ||| ||||||| |||||||||||| ||| |||||||||||||  |||| |||||    
T  19644612 tggtggtcaaacccgttacaatgtttgggtattggctaacttgtttttgttgttgtactgaattctgaa 19644544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 23119057 - 23118995
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaat 89  Q
    |||||||||| ||| ||| ||||| | |||||||||||  ||||||||||||||||| |||||    
T  23119057 tggtggtcaaacccgttacaatgtctgggtattggctagcttggttttgttgttgtacagaat 23118995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 3735804 - 3735853
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  3735804 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 3735853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 7473028 - 7472980
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttg 75  Q
    |||||||||| ||| ||| ||||||| |||||||||||| |||||||||    
T  7473028 tggtggtcaaacccgttacaatgtttgggtattggctaacttggttttg 7472980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 47526627 - 47526676
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  47526627 taacacaaattcctaaaagttaattttattttatatgtgttaatattttt 47526676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 5086539 - 5086695
Alignment:
Q  24 agatggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtg 123  Q
    ||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||||| ||| | ||||| | ||||  | ||||| || |||||| |    
T  5086539 agatggtggtcaacccctttacaatgtttgagtattggctaagttggttttgttgttgtacagacttctgaattttgttcctccttgaggaatctttgag 5086638  T
Q  124 gcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    ||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||||    
T  5086639 gcatgccttgtgctaatg-agactcttgttgttaatataattccatttttgattgttc 5086695  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 33019602 - 33019450
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||||||| ||||||| |||||||||| ||||||||||||||| |||  || | ||  | |  | |||||||||| ||||||||| ||||    
T  33019602 tggtggtcaagccctttacaatgtttgggtattggctgagttggttttgttgtagtactgacttctacatttcggtgtttcttgatgagtctttgaggca 33019503  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    |||||||||||| ||| | |||||||||||||||||||| ||||||||||||||    
T  33019502 cgccttgtgctaatgagg-ctcttgttgttaatataattacattttttattgtt 33019450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 504121 - 504187
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  504121 agtctttgtggcacgtcttgtgctattga-gactcttgttgttaatataattccatttttgattgttc 504187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 8263796 - 8263730
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  8263796 agtctttgtggcacgtcttgtgctattga-gactcttgttgttaatataatcccattttttattgttc 8263730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 15644220 - 15644282
Alignment:
Q  118 tttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  15644220 tttgtggcacgtcttgtgctaatga-gactcttgttgttaatataattccatttttgattgttc 15644282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 19227064 - 19226998
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  19227064 agtctttgtggcacatcttgtgctattga-gactcttgttgttaatttaattccatttttgattgttc 19226998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 8263867 - 8263799
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaa 95  Q
    |||||||||| ||| ||| ||||||| |||||||||||| ||||||||| ||||||| |||||| ||||    
T  8263867 tggtggtcaaacccgttacaatgtttgggtattggctaacttggttttgctgttgtacagaatattgaa 8263799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 504050 - 504106
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgta 83  Q
    |||||||||| ||| ||| ||||||| |||||||||||| ||||||||| |||||||    
T  504050 tggtggtcaaacccgttacaatgtttgggtattggctaacttggttttgctgttgta 504106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 19227135 - 19227079
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgta 83  Q
    |||||||||| ||| ||| ||||||| |||||||||||| ||| ||||||| |||||    
T  19227135 tggtggtcaaacccgttacaatgtttgggtattggctaacttgtttttgttattgta 19227079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 33639539 - 33639483
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgta 83  Q
    |||||||||| ||| ||| ||||||| ||||| |||||| ||| |||||||||||||    
T  33639539 tggtggtcaaacccgttacaatgtttgggtatcggctaacttgtttttgttgttgta 33639483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 7178507 - 7178354
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||||||| ||||||| |||||||||| ||||||||| |||||||||  || | ||    | || |||||||||||||||||||| ||||    
T  7178507 tggtggtcaagccctttacaatgtttgggtattggctgagttggtttcgttgttgtactgacttctactttttggtgtttcttgacgagtctttgaggca 7178408  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  7178407 cgccttgtgctaatga-gactcttgttgttaatataattccatttttgattgttc 7178354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 34709434 - 34709591
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||| ||||| ||||||| ||||| | || |||| |||||||||||||||||| ||| |||  | || || |||||||||| ||| ||||||||||||||    
T  34709434 tggttgtcaagccctttacaatgtctgggcattgactaagttggttttgttgtcgtacagacaattggacactgttgtttcctgaggagtctttgtggca 34709533  T
Q  127 cgccttgtgctattgaagactcttgt----tgttaatataattccattttttattgttc 181  Q
    || |||||||||||| ||||||||||    ||||||||||||||||||||| |||||||    
T  34709534 cgtcttgtgctattg-agactcttgtgtgctgttaatataattccatttttgattgttc 34709591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 25505512 - 25505648
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||| ||| ||||||| |||||||||||| ||||||||||||||||| ||||| ||||| |                |||||||||||||    
T  25505512 tggtggtcaaacccgttacaatgtttgggtattggctaacttggttttgttgttgtacagaattctgaagt----------------agtctttgtggca 25505595  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    || ||||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  25505596 cgtcttgtgctaatga-gactcttgttgttaatataattccatttttaattgtt 25505648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 24314641 - 24314504
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||| ||| ||||||| |||||||||||| |||||||||| |||||||||||| ||||| |                |||||||||||||    
T  24314641 tggtggtcaaacccgttacaatgtttgggtattggctaacttggttttgtggttgtatagaattctgaagt----------------agtctttgtggca 24314558  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    || ||||||||| || |||||| |||||||||||||||| ||||||| |||||||    
T  24314557 cgtcttgtgctagtg-agactcctgttgttaatataatttcatttttgattgttc 24314504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 21443294 - 21443245
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||    
T  21443294 taacacaaattcttaaaagttaattttattttatatgtgttaatattttt 21443245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 29019174 - 29019223
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||    
T  29019174 taacacaaattcttaaaagttaattttattctatatgtgttaatattttt 29019223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 4652472 - 4652521
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  4652472 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 4652521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 5943195 - 5943146
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  5943195 taacacaaattcctaaaagttaattttattatatatgtgttaatattttt 5943146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 10787798 - 10787749
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  10787798 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 10787749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 19082068 - 19082117
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  19082068 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 19082117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 19129956 - 19130005
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  19129956 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 19130005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 20582491 - 20582540
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  20582491 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 20582540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 22867826 - 22867777
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  22867826 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 22867777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 23616006 - 23616055
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  23616006 taacacaaattcctaaaagttaattttattatatatgtgttaatattttt 23616055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 23647337 - 23647386
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  23647337 taacacaaattcctaaaagttaattttattatatatgtgttaatattttt 23647386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 40374996 - 40375045
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    ||||||||||||||||||||||||| |||    |||||||||||||||||    
T  40374996 taacacaaattcttaaaagttaattatattatatatgtgttaatattttt 40375045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 13909249 - 13909096
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||  || | ||  | |  | |||||||||| ||||||||| ||||    
T  13909249 tggtggtcaagccctttacaatgtttgggtattggctgagttggttttgttgttgtactgacttctacatttcggtgtttcttgatgagtctttgaggca 13909150  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |||||||||||| | ||| |||||||||||||||||||| ||||||| |||||||    
T  13909149 cgccttgtgctaat-aaggctcttgttgttaatataatttcatttttgattgttc 13909096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 36319009 - 36319077
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaa 95  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||| ||||| |||||    
T  36319009 tggtggtcaaaccctttacaatgtttaggtattggctaacttggttttgctgttgtagagaatcctgaa 36319077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 4988655 - 4988720
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    ||||||| ||||||  ||||||||||||| ||||||||||| ||||||||||| |||||| ||||||    
T  4988655 agtctttatggcacatcttgtgctattga-gactcttgttggtaatataattctatttttgattgtt 4988720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 36319080 - 36319145
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    ||||||| || |||  ||||||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  36319080 agtctttatgacacatcttgtgctattga-gactcttgttgttaatataatcccatttttgattgtt 36319145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 4988584 - 4988640
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgta 83  Q
    |||||||||| ||| ||| ||||||| |||||||||||| ||| ||||||| |||||    
T  4988584 tggtggtcaaacccgttacaatgtttgggtattggctaacttgtttttgttattgta 4988640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 41529588 - 41529637
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  41529588 taacacaaattcctaaaagttaattttattatatatgtgttaatattttt 41529637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 15017297 - 15017144
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgttt-cttgacgagtctttgtggc 125  Q
    |||||||||| ||||||| ||||||| |||||||| | ||||||||| |||||||||  || | ||    | || ||||| ||||||||||||||| |||    
T  15017297 tggtggtcaagccctttacaatgtttgggtattggttgagttggtttcgttgttgtactgacttctactttttggtgttttcttgacgagtctttgaggc 15017198  T
Q  126 acgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  15017197 acgccttgtgctaatga-gactcttgttgttaatataattccattttttattgtt 15017144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 5325380 - 5325231
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||||||| ||||||| | |||||||| ||||||||| |||||||||     | ||    | || |||||||||||||||||||| ||||    
T  5325380 tggtggtcaagccctttacaatgtttggatattggctgagttggtttcgttgttgtac----ttctactttttggtgtttcttgacgagtctttgaggca 5325285  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||| |||||||    
T  5325284 cgccttgtgctaatg-agactcttgttgttaatataatttcatttttgattgttc 5325231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 10978595 - 10978660
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  10978595 agtctttgtggcacatcttgtgctattga-gactcttgttgttaatataatcccatttttaattgtt 10978660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 23865731 - 23865682
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  23865731 taacacaaattcctaaaagttaattttattatatatgtgttaatattttt 23865682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 24079769 - 24079816
Alignment:
Q  194 taacacaaattcttaaaagttaattttat--tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||  |||||| ||||||||||    
T  24079769 taacacaaattcctaaaagttaattttattctatgtgataatattttt 24079816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 21439428 - 21439580
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||||||| ||||||| |||||||||| ||||||||| |||||||||  || | ||    | || |||||||||||||||||||| ||||    
T  21439428 tggtggtcaagccctttacaatgtttgggtattggctgagttggtttcgttgttgtactgacttctactttttggtgtttcttgacgagtctttgaggca 21439527  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    ||||||| |||| ||| |||||||||||||||||||||| ||||||| ||||||    
T  21439528 cgccttgcgctaatga-gactcttgttgttaatataatttcatttttgattgtt 21439580  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 25923621 - 25923556
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  25923621 agtctttgtggcacgtcttgtgctattga-gactcttgttgttaatataatcccatttttgattgtt 25923556  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 45987671 - 45987534
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||| ||||||||||| |||||||||||| ||| |||||||||||||  ||||      |||||| ||         |||||||||||||    
T  45987671 tggtggtcaaacccgttataatgtttgggtattggctaacttgtttttgttgttgtactgaat------ctctgtagt---------agtctttgtggca 45987587  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    |  |||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  45987586 catcttgtgctattg-agactcttgttgttaatataattccatttttgattgtt 45987534  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 6970479 - 6970402
Alignment:
Q  102 tgtttcttgacgagtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgtt 180  Q
    ||||||| |||||||||||| ||||||||||||||||  | || |||||||||||||||||||| ||||||| ||||||    
T  6970479 tgtttctggacgagtctttgaggcacgccttgtgctaacg-aggctcttgttgttaatataatttcatttttgattgtt 6970402  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 34519123 - 34519260
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagtctttgtggca 126  Q
    |||||||||| ||| ||| ||||||| |||||||||||| ||| |||||||||||||       ||||||||||| ||         |||||||||||||    
T  34519123 tggtggtcaaacccgttacaatgtttgggtattggctaacttgtttttgttgttgta-------ctgaactctgtagt---------agtctttgtggca 34519206  T
Q  127 cgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |  ||||||||||||| |||||||||||||||||| ||| ||||||| |||||||    
T  34519207 catcttgtgctattga-gactcttgttgttaatattatttcatttttgattgttc 34519260  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 33796958 - 33797043
Alignment:
Q  99 tgttgtttcttgacgagtctttgtggcacgccttgtgctattgaagactcttg----ttgttaatataattccattttttattgttc 181  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| | | |||||    |||||||||||||||||||||| |||||||    
T  33796958 tgttgtttcttgaggagtctcagtggcacgccttgtgctattg-atattcttgtgatttgttaatataattccatttttgattgttc 33797043  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 6970626 - 6970570
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgta 83  Q
    |||||||||| ||||||| ||||||| |||||||||| ||||| |||||||||||||    
T  6970626 tggtggtcaagccctttacaatgtttgggtattggctgagttgattttgttgttgta 6970570  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 14054045 - 14053994
Alignment:
Q  129 ccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  14054045 ccttgtgctattga-gactcttattgttaatataattccatttttgattgttc 14053994  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 14364073 - 14364022
Alignment:
Q  129 ccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  14364073 ccttgtgctattga-gactcttattgttaatataattccatttttgattgttc 14364022  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 17804567 - 17804499
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaa 95  Q
    |||||||||| ||| ||| ||||||| |||||||||||| ||| ||||||||||||| ||||| |||||    
T  17804567 tggtggtcaaacccgttacaatgtttgggtattggctaacttgattttgttgttgtacagaatcctgaa 17804499  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 25923692 - 25923624
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaa 95  Q
    |||||||||| ||| ||| ||||||| |||||||||||| ||||||||| ||||||| ||||| |||||    
T  25923692 tggtggtcaaacccgttacaatgtttgggtattggctaacttggttttgctgttgtacagaatcctgaa 25923624  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 2009408 - 2009492
Alignment:
Q  98 ctgttgtttcttgacgagtctttgtggcacgccttgtgctattgaagactcttg---ttgttaatataattccattttttattgtt 180  Q
    |||||||||||||| |||| |  ||||||||||||||||||||| ||| |||||   ||||||||||||||| ||| || ||||||    
T  2009408 ctgttgtttcttgaggagtttcagtggcacgccttgtgctattg-agattcttgtgtttgttaatataattctattcttgattgtt 2009492  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 17804496 - 17804433
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    ||||||||| ||||| ||||||||||||| ||||||||||   |||||||| |||||||| |||||||    
T  17804496 agtctttgtagcacgtcttgtgctattga-gactcttgtt---aatataatcccatttttgattgttc 17804433  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 6496483 - 6496532
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  6496483 taacacaaattcctaaaagttaattttattttatatgtgttaatattttt 6496532  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 32985326 - 32985375
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  32985326 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 32985375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 38433445 - 38433398
Alignment:
Q  194 taacacaaattcttaaaagttaattttatta--tgtgttaatattttt 239  Q
    |||||||||||| |||||||| |||||||||  |||||||||||||||    
T  38433445 taacacaaattcctaaaagttgattttattatttgtgttaatattttt 38433398  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 39778717 - 39778766
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  39778717 taacacaaattcctaaaagttaattttattatatatgtgttaatattttt 39778766  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 47396365 - 47396414
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  47396365 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 47396414  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 22095769 - 22095858
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttcttgacgagt 116  Q
    |||||||||| ||||||| ||||| | |||||||||||| |||||||||||| |||||||| |||||| || ||||||||||||| ||||    
T  22095769 tggtggtcaagccctttacaatgtctgggtattggctaatttggttttgttggtgtatagactactgatctttgttgtttcttgaggagt 22095858  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 11575211 - 11575356
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtatagaatactgaactctgttgtttc-ttgacgagtctttgtggc 125  Q
    |||||||||| ||||||| ||||||| |||||||||| ||||||| | |||||||||  || | ||    | || |||||  ||||||||| |||| |||    
T  11575211 tggtggtcaagccctttacaatgtttgggtattggcttagttggtgtcgttgttgtactgacttctactttttggtgttttgttgacgagtatttgaggc 11575310  T
Q  126 acgccttgtgctattgaagactcttgttgttaatataattccatttt 172  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||||    
T  11575311 acgctttgtgctaatga-gactcttgttgttaatataattccatttt 11575356  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 22095893 - 22095952
Alignment:
Q  121 gtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    |||||||||||||||||| ||| |||||| |||||| |||||||||||||||| |||||||    
T  22095893 gtggcacgccttgtgctaatga-gactctggttgtttatataattccatttttgattgttc 22095952  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 5415666 - 5415723
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgtat 84  Q
    |||||||||| ||| ||| ||||||| |||||||||||| || |||||||||| ||||    
T  5415666 tggtggtcaaacccgttacaatgtttgggtattggctaactttgttttgttgtggtat 5415723  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 5415730 - 5415763
Alignment:
Q  147 tcttgttgttaatataattccattttttattgtt 180  Q
    ||||||||||||||||||||||||||| ||||||    
T  5415730 tcttgttgttaatataattccatttttgattgtt 5415763  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 6829162 - 6829205
Alignment:
Q  198 acaaattcttaaaagttaattttat--tatgtgttaatattttt 239  Q
    |||||||| ||||||||||||||||  |||||||||||||||||    
T  6829162 acaaattcgtaaaagttaattttattctatgtgttaatattttt 6829205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 7784151 - 7784200
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  7784151 taacacaaattcctaaaagttaattttattatatatgtgttaatattttt 7784200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 16467293 - 16467342
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  16467293 taacacaaattcctaaaagttaattttattatatatgtgttaatattttt 16467342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 19263303 - 19263254
Alignment:
Q  194 taacacaaattcttaaaagttaattttat----tatgtgttaatattttt 239  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  19263303 taacacaaattcctaaaagttaattttattctatatgtgttaatattttt 19263254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 10459 - 10393
Alignment:
Q  114 agtctttgtggcacgccttgtgctattgaagactcttgttgttaatataattccattttttattgttc 181  Q
    ||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  10459 agtctttgtagcacgtcttgtgctaatga-gactcttgttgttaatataattccatttttgattgttc 10393  T

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Target: scaffold0108; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 10530 - 10475
Alignment:
Q  27 tggtggtcaatccctttataatgtttaggtattggctaagttggttttgttgttgt 82  Q
    ||||||| || ||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  10530 tggtggttaaacccgttacaatgtttgggtattggctaacttggttttgttgttgt 10475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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