View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393-Insertion-1 (Length: 593)
Name: NF2393-Insertion-1
Description: NF2393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393-Insertion-1 |
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| [»] scaffold0137 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 7 - 593
Target Start/End: Complemental strand, 4620 - 4040
Alignment:
| Q |
7 |
atgaacaaaggcctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
4620 |
atgaacaaaggcctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacttgtactgaatcaattttattttccttgttga |
4521 |
T |
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| Q |
107 |
taggctttagatgaagcacgtgatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcaccctct |
206 |
Q |
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| T |
4520 |
taggctttagatgaagcacgtaatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcaccctct |
4421 |
T |
|
| Q |
207 |
ggacttttgatgacatggtaaaatgtctataccataatcatcacgtcaaagcattttgattaataatcattggtctctttataatattatcccaagttga |
306 |
Q |
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| T |
4420 |
ggacttttgatgacacggtaaaatgtctatacaataatcatcacgtcaaagcattttgattaataatcattggtctctttataatattatcccaagttga |
4321 |
T |
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| Q |
307 |
tcataatctaagttaaagctatatttggcttcttgcaggaccagctagacgagcattgagcactgatattccatataggttgacggac--ggtgtattct |
404 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
4320 |
tcataatctaagttaaagctatatttggcttcatgcaggaccagctagacgagcattgagcactgatattccatataggttgacagacggggtgtattct |
4221 |
T |
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| Q |
405 |
tcctctgaaggagatgtcattttagacttttagtcattccatataagtgttaattaagaatcaccctcattaggtccatcttgcttttgattttagtcat |
504 |
Q |
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| T |
4220 |
tcctctgaaggagatgtca--------ttttagtcattccatataagtgttaattaagaatcaccctcattaggtccatcttgcttttgattttagtcat |
4129 |
T |
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| Q |
505 |
tagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgctctttcttcaggtttggttggggtgtttttgggca |
593 |
Q |
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| T |
4128 |
tagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgctctttctttaggtttggttggggtgtttttgggca |
4040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 7 - 593
Target Start/End: Complemental strand, 3896966 - 3896375
Alignment:
| Q |
7 |
atgaacaaaggcctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttga |
106 |
Q |
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| T |
3896966 |
atgaacaaagacctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttga |
3896867 |
T |
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| Q |
107 |
taggctttagatgaagcacgtgatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcaccctct |
206 |
Q |
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| T |
3896866 |
taggctttagatgaagcacgtaatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcatcctct |
3896767 |
T |
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| Q |
207 |
ggacttttgatgacatggtaaaatgtctataccataatcatcacgtcaaagcattttgattaataatcattggtctctttataatattatcccaagttga |
306 |
Q |
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| T |
3896766 |
ggacttttgatgacatggtaaaatgtctatacaataatcatcacgtcaaagcattttgattaataatcattgatctctttataatattatccaaagttga |
3896667 |
T |
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| Q |
307 |
tcataatctaagttaaagctatatttggcttcttgcaggaccagctagacgagcattgagcactgatattccatataggttgacggac--ggtgtattct |
404 |
Q |
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| T |
3896666 |
tcataatctaagttaaagctatatttggcttcttgcaggaccagctagacgagcattgagcactgatattccatataggttgacggacggggtgtattct |
3896567 |
T |
|
| Q |
405 |
tcctctgaaggagatgtcatttta--gac-ttttagtcattccatataagtgttaattaagaatcaccctcattaggtccatcttgcttttgattttagt |
501 |
Q |
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| T |
3896566 |
tcctctgaaggagatgtgctatgaatgtcattttagtcattccatataagtattatttaagaatcaccctcattaggtccattttgcttttgattttagt |
3896467 |
T |
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| Q |
502 |
cattagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgctctttcttcaggtttggttggggtgtttttgggca |
593 |
Q |
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| T |
3896466 |
cattagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgctctttcttcaggtttggttggggtgtttttgggca |
3896375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 251 - 365
Target Start/End: Original strand, 46285233 - 46285347
Alignment:
| Q |
251 |
gtcaaagcattttgattaataatcattggtctcttta--taatattatcccaagttgatcataatctaagttaaagctatatttggcttcttgcaggacc |
348 |
Q |
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||||||||||||| |||||||||||||||||||| | ||||||| |||| ||||||||||||| |||||| ||||||||||| |||| |||||||| |
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| T |
46285233 |
gtcaaagcattttaattaataatcattggtctctcttcctaatattgctccaaattgatcataatctgagttaa-gctatatttggattct-gcaggacc |
46285330 |
T |
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| Q |
349 |
agctagacgagcattga |
365 |
Q |
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| T |
46285331 |
agctagatgagccttga |
46285347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 46285038 - 46285194
Alignment:
| Q |
79 |
actgaatcaattttcttttccttgttgataggctttagatgaagcacgtgatgagct---caaattgggagatgaatactacaaagacagcacggttcgc |
175 |
Q |
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|||||| |||| ||||||||||| | |||||||||| || |||||| || ||| || || ||||||||| |||| ||||||||||||||| || |
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| T |
46285038 |
actgaaacaatattcttttccttctggataggcttttgaggaagcaattgctgaactggacacattgggagaagaatcctacaaagacagcacacttata |
46285137 |
T |
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| Q |
176 |
atgcaacttttgagaaacaacatcaccctctggacttttgatgacatggtaaaatgt |
232 |
Q |
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||||||||||||||| ||||| ||||||| ||||||| ||||| | |||||||||| |
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| T |
46285138 |
atgcaacttttgagagacaacctcaccctttggacttctgatgtccaggtaaaatgt |
46285194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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