View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393-Insertion-2 (Length: 528)
Name: NF2393-Insertion-2
Description: NF2393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Complemental strand, 14127414 - 14126903
Alignment:
| Q |
8 |
ggaatgagactcaacatcccaatcgagggacatcaacaacattttctataaatagatgcataaacatgattgattaatttgaggggatttgtgttgggct |
107 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14127414 |
ggaatgagactcaacatcccaatcgagggacatcatcgacattttctataaatagatgcataaacatgattgattaatttgaggggctttgtgttgggct |
14127315 |
T |
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| Q |
108 |
gccttaggagatgggatatcagggatcattattggaggtggagggatagagttcccacctcgaatccaaaatggatcccaaactgatatgttggttcccg |
207 |
Q |
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| T |
14127314 |
gcattaggtgacgggatatcagggatcattattggaggtggagggatagagttcccacctcgaatccaaaatggatcccaaactggtatgttggttcccg |
14127215 |
T |
|
| Q |
208 |
ttccaattttccgtctgaatccgcttcgcagtactggtttaacactccaaatactccgccaaatgaaacttgggttgtgtcccgtgcctgcagcaaaata |
307 |
Q |
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| T |
14127214 |
ttccaattttccgtctgaatccgctttgcagtactggtttaacactccaaatactccgccaaatgaaacatgggttgtgtcccgtgcctgcagcaaaata |
14127115 |
T |
|
| Q |
308 |
atcactattaattggggaagtatctagctttgagtaatctagtgattaaagatccaggttacgtgagtatcttccaagtctgcttccttaacattgccat |
407 |
Q |
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| T |
14127114 |
atcact----attggggaagtatctagctttgagtagtctagtgattaaagatccaggttacgtgagtatcttccacgtctgcttccttaacattgccat |
14127019 |
T |
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| Q |
408 |
attaaagtctttgagacttttgaaacccatgcctccgaacccttccgcaactctgagtcgctcccacgacaaccaatgcatacctcttatgtttccatta |
507 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14127018 |
attaaaggctttgagacttttgaaacccatgcctccgaacccttttgcaactctgagtcgctcccacgacaaccaatgcatacctcttatgtttccatta |
14126919 |
T |
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| Q |
508 |
caatgtccccaacaaa |
523 |
Q |
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| T |
14126918 |
caatgtccccaacaaa |
14126903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 443
Target Start/End: Original strand, 16136724 - 16136994
Alignment:
| Q |
169 |
gaatccaaaatggatcccaaactgatatgttggttcccgttccaattttccgtctgaatccgcttcgcagtactggtttaacactccaaatactccgcca |
268 |
Q |
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||||||||||||| ||||||||| | || |||||||| |||||||| ||| |||||| || || |||| |||| || || |||||||| || | ||| |
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| T |
16136724 |
gaatccaaaatgggtcccaaactaagatattggttcctgttccaatgctccatctgaagccattttgcagcactgactttacgctccaaatgcttctcca |
16136823 |
T |
|
| Q |
269 |
aatgaaacttgggttgtgtcccgtgcctgcagcaaaataatcactattaattggggaagtatctagctttgagtaatctagtgattaaagatccaggtta |
368 |
Q |
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| T |
16136824 |
gacatagctcggattatgtcccgatcttgcagcaaagtaatcactagta----gggaaatatctagctttgaatagcctagtgatcatggatttagggtg |
16136919 |
T |
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| Q |
369 |
cgtgagtatcttccaagtctgcttccttaacattgccatattaaagtctttgagacttttgaaacccatgcctcc |
443 |
Q |
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| T |
16136920 |
cgtgagaatcttccacgcctgcttccccaacattgccatattaaaggctttgagacttttaaaacacattcctcc |
16136994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 443
Target Start/End: Complemental strand, 6769892 - 6769771
Alignment:
| Q |
322 |
gggaagtatctagctttgagtaatctagtgattaaagatccaggttacgtgagtatcttccaagtctgcttccttaacattgccatattaaagtctttga |
421 |
Q |
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||||| ||| ||||||||| |||| ||||||| || || |||||| ||||| ||||||||||||||||||| |||||||||||| ||||| |||||| |
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| T |
6769892 |
gggaaatatttagctttgaataatttagtgatcaatgagtcaggttgtgtgagaatcttccaagtctgcttccctaacattgccatgttaaaagctttga |
6769793 |
T |
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| Q |
422 |
gacttttgaaacccatgcctcc |
443 |
Q |
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| | ||| || ||||| ||||| |
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| T |
6769792 |
gtcctttaaatcccattcctcc |
6769771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 28809981 - 28810036
Alignment:
| Q |
328 |
tatctagctttgagtaatctagtgattaaagatccaggttacgtgagtatcttcca |
383 |
Q |
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||||||||||||| |||||||| |||||||||| |||||| ||||||||| ||||| |
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| T |
28809981 |
tatctagctttgaataatctagcgattaaagattcaggttgcgtgagtattttcca |
28810036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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