View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393-Insertion-4 (Length: 365)
Name: NF2393-Insertion-4
Description: NF2393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 9649998 - 9650308
Alignment:
| Q |
7 |
ataaagaacgacacacttaacagattcaatcttgtctacaaaatatctnnnnnnnn-cacagcattatcaagtttcatcatgttattaagaataaacccg |
105 |
Q |
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| T |
9649998 |
ataaagaacgacacacttaacagattcaatcttgtctacaaaatatctaaaaaaaaacagagcattatcaagtttcatcatgttattaagaataaacccg |
9650097 |
T |
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| Q |
106 |
gcactgcgttcggttacattaccctcaaaaccattcaagattacatacacttgttgctcattaggatcacatgagtcaagagatttggcaagtttcaaaa |
205 |
Q |
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| T |
9650098 |
gcactgcgttcggttacattaccctcaaaaccattcaagatttcatacacttgttgctcattaggatcacatgagtcaagagatttggcaagtttcaaaa |
9650197 |
T |
|
| Q |
206 |
gcaat-gaattgtcagaattgttcaaaattgatttgatattggggtttttgggattgacccaaatgtcggattttgataaaggtgaagactttgcatctg |
304 |
Q |
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| T |
9650198 |
gcaatggaattgtcagaattgttcaaaattgatttgatattggggtttttgggattgacccagatgtgggattttgataaaggtgaagactttgcatctg |
9650297 |
T |
|
| Q |
305 |
ggttttgaatg |
315 |
Q |
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||||||||||| |
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| T |
9650298 |
ggttttgaatg |
9650308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 239 - 365
Target Start/End: Original strand, 9650307 - 9650433
Alignment:
| Q |
239 |
tgatattggggtttttgggattgacccaaatgtcggattttgataaaggtgaagactttgcatctgggttttgaatggagaatagtttgcgattggggtg |
338 |
Q |
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|||| |||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9650307 |
tgattttggggtttttgggattgacccggatgtgggattttgataaaggtggagactttgcatctgggttttgaatggagaagagtttgcgattggggtg |
9650406 |
T |
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| Q |
339 |
taaagtagagaagggtgtgagggtgga |
365 |
Q |
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| T |
9650407 |
taaagtagagaagggtgtgagggtgga |
9650433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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