View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393-Insertion-6 (Length: 157)
Name: NF2393-Insertion-6
Description: NF2393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 31286317 - 31286399
Alignment:
| Q |
7 |
aaaatgaacagtccagattaaaaggttcacttaaacaatgcacgtgacttttttggttggcctacgcgcttgctgcctgccct |
89 |
Q |
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| T |
31286317 |
aaaatgaacagtccagattaaaaggttcacttaaacaatgcacgtgacttttttggttggtctacgcgcttgctgcctgccct |
31286399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 7e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 7e-35
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 24063932 - 24064014
Alignment:
| Q |
7 |
aaaatgaacagtccagattaaaaggttcacttaaacaatgcacgtgacttttttggttggcctacgcgcttgctgcctgccct |
89 |
Q |
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| T |
24063932 |
aaaatgaacagtccagattaaaaggttcacttaaacaatgcacgtgacttttttggttggtctacgtgcttgctgcctgccct |
24064014 |
T |
|
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Target: chr4 (Bit Score: 73; Significance: 1e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 26341356 - 26341276
Alignment:
| Q |
7 |
aaaatgaacagtccagattaaaaggttcacttaaacaatgcacgtgacttttttggttggcctacgcgcttgctgcctgcc |
87 |
Q |
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| T |
26341356 |
aaaatgaacagtccagattaaaaggttcacttaaacaatgcacgtgacttttttggttggtctacgtgcttgctgcctgcc |
26341276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 43461408 - 43461326
Alignment:
| Q |
7 |
aaaatgaacagtccagattaaaaggttcacttaaacaatgcacgtgacttttttggttggcctacgcgcttgctgcctgccct |
89 |
Q |
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| T |
43461408 |
aaaatgaacagtccaaattaaaaggttcacttaaacaatgcacgtgacttttgtggttggtctacgtgcttgctgcctgccct |
43461326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 26341237 - 26341203
Alignment:
| Q |
123 |
agaaacttgcgttagcttatgttcctgttctttga |
157 |
Q |
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| T |
26341237 |
agaaacttgcgttagcttatgttcctgttctttga |
26341203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 43461292 - 43461258
Alignment:
| Q |
123 |
agaaacttgcgttagcttatgttcctgttctttga |
157 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43461292 |
agaaacttgcgttagcttatgttcctgttctttga |
43461258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 7e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 6052583 - 6052499
Alignment:
| Q |
7 |
aaaatgaacagtccagattaaaaggttcacttaaacaatg--cacgtgacttttttggttggcctacgcgcttgctgcctgccct |
89 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6052583 |
aaaatgaacagtccagattaaaaggttcacttaaacaatgtgcacgtgacttttttggttggtctacgcgcttgctgcctgccct |
6052499 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 12698125 - 12698050
Alignment:
| Q |
7 |
aaaatgaacagtccagattaaaaggttcacttaaacaatgcacgtgacttttttggttggcctacgcgcttgctgc |
82 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
12698125 |
aaaatgaacagtccagattaaaaggttcacttaaacaatgaacgtgacttttttggttggtctacgcggttgctgc |
12698050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 12698010 - 12697976
Alignment:
| Q |
123 |
agaaacttgcgttagcttatgttcctgttctttga |
157 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
12698010 |
agaaacttgcgttagcttatgttcctgttctttga |
12697976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 6052465 - 6052431
Alignment:
| Q |
123 |
agaaacttgcgttagcttatgttcctgttctttga |
157 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
6052465 |
agaaacttgtgttagcttatgttcctgttctttga |
6052431 |
T |
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