View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2393R-Insertion-3 (Length: 902)
Name: NF2393R-Insertion-3
Description: NF2393R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393R-Insertion-3 |
 | |
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| [»] scaffold0137 (2 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 439 - 901
Target Start/End: Original strand, 3898713 - 3899175
Alignment:
| Q |
439 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
538 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898713 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
3898812 |
T |
|
| Q |
539 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgat |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
3898813 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactcggat |
3898912 |
T |
|
| Q |
639 |
tcaactttggacttgtatttcttaacatgcacaacgtgatcatcttcattctttctaccttcttcctccttcgaaaggattctcaacgccgcacgaagtg |
738 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898913 |
tcaactttggacttgtatttcttaacatgcacaaagtgatcatcttcattctttctaccttcttcctccttcgaaaggattctcaacgccgcacgaagtg |
3899012 |
T |
|
| Q |
739 |
gttcgatcgcgttcttgtaagcgacagatagtaggttcatctcttccaagctaagctctgaggctggtgtgtaccctacaactatcttctgcatgaagga |
838 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3899013 |
gttcggtcgcgttcttgtaagcgacagatagtaggttcatctcttccaagctaagctctgaggctggtgtgtaccctacaactatcttctgcatgaagga |
3899112 |
T |
|
| Q |
839 |
aaccatctcctcgtagcgttccgcttgttgtgctagttttgcaaggaacacatactcttctct |
901 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3899113 |
aaccatctcctcgtagcgttccgcttgttgtgctagttttgcatggaacacatactcttctct |
3899175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 3896961 - 3897297
Alignment:
| Q |
9 |
gttcattcaccgacacatataattacatgcaatattattaattttctcaaactattatcattgttgacgtgtccgtgcttcatagaaaacattcatcaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3896961 |
gttcattcaccgacacatataattacatgcaatattattaattttctcaaactattatcattgttgacgtatccgtgcttcatagaaaacattcatcaca |
3897060 |
T |
|
| Q |
109 |
aattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctg |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3897061 |
aattaatggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctg |
3897160 |
T |
|
| Q |
209 |
tctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgagaagatcga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3897161 |
tctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgagaagatcga |
3897260 |
T |
|
| Q |
309 |
agatccgccgtagcaatatccttcaaacaatcacaac |
345 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
3897261 |
agatctgccgcagcaatatccttcaaacaatcacaac |
3897297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 439 - 901
Target Start/End: Complemental strand, 46283571 - 46283103
Alignment:
| Q |
439 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
538 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
46283571 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacctatgataatcacctttcat |
46283472 |
T |
|
| Q |
539 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgat |
638 |
Q |
| |
|
|| |||||||| |||| || | |||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| ||| |
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|
| T |
46283471 |
cttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatccaacaactccagaatactaccacaaacattcgtcaactctgat |
46283372 |
T |
|
| Q |
639 |
tcaactttggacttgtatttcttaacatgcacaacgtgatcatcttcattctttctaccttcttcctcc--ttc-------gaaaggattctcaacgccg |
729 |
Q |
| |
|
||||||||||| |||| | ||| ||| ||||||| || |||||||||||||||||||||||||| | ||| |||| ||||||| |||| | |
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|
| T |
46283371 |
tcaactttggatctgtaatccttcacaagcacaac---atgatcttcattctttctaccttcttccttctgttcaatcgaagaaacgattctccacgcag |
46283275 |
T |
|
| Q |
730 |
cacgaagtggttcgatcgcgttcttgtaagcgacagatagtaggttcatctcttccaagctaagctctgaggctggtgtgtaccctacaactatcttctg |
829 |
Q |
| |
|
|||| || | | ||||| |||||||||||||||| |||| |||||| ||||||| | |||||||||||| | ||||||| |||| || || | |||||| |
|
|
| T |
46283274 |
cacgtagcgatccgatcacgttcttgtaagcgacggatatgaggttcctctcttcgacgctaagctctgatgatggtgtggaccccactacaagcttctg |
46283175 |
T |
|
| Q |
830 |
catgaaggaaaccatctcctcgtagcgttccgcttgttgtgctagttttgcaaggaacacatactcttctct |
901 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| ||| |||||||| ||| ||||||||| |||||| |
|
|
| T |
46283174 |
catgaaggagaccatctcctcgtagcgttcagcttgttctgcgagttttgctaggtacacatactgttctct |
46283103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 182 - 331
Target Start/End: Complemental strand, 46283795 - 46283646
Alignment:
| Q |
182 |
aaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaa |
281 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||| | ||| |||| | | || |||||||| ||||||||||| |||||||| | ||||||| |
|
|
| T |
46283795 |
aaacaagatcagattaacacaaacctgtttggccatgtcacaagctttgtcagattgattgagaatttcgtaatagaaaacagagaaattgagagccaaa |
46283696 |
T |
|
| Q |
282 |
cccaatcttataggatgagaagatcgaagatccgccgtagcaatatcctt |
331 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| | |||||||||||| |
|
|
| T |
46283695 |
cccaatcttataggatgagttgatggaagatccgcagcagcaatatcctt |
46283646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 439 - 901
Target Start/End: Original strand, 5044 - 5506
Alignment:
| Q |
439 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
538 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5044 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
5143 |
T |
|
| Q |
539 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactccgat |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5144 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccagcaactccagaatactaccacaaacattctccaactctgat |
5243 |
T |
|
| Q |
639 |
tcaactttggacttgtatttcttaacatgcacaacgtgatcatcttcattctttctaccttcttcctccttcgaaaggattctcaacgccgcacgaagtg |
738 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5244 |
tcaactttggacttgtatttcttaacatgcacaaagtgatcatcttcattctttctaccttcttcctcctttgaaaggattctcaacgccgcacgaagtg |
5343 |
T |
|
| Q |
739 |
gttcgatcgcgttcttgtaagcgacagatagtaggttcatctcttccaagctaagctctgaggctggtgtgtaccctacaactatcttctgcatgaagga |
838 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5344 |
gttcggtcgcgttcttgtaagcgacagatagtaggttcatctcttccaagctaagctctgaggctggtgtgtaccctacaactatcttctgcatgaagga |
5443 |
T |
|
| Q |
839 |
aaccatctcctcgtagcgttccgcttgttgtgctagttttgcaaggaacacatactcttctct |
901 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5444 |
aaccatctcctcgtagcgttccgcttgttgtgctagttttgcatggaacacatactcttctct |
5506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 4615 - 4953
Alignment:
| Q |
9 |
gttcattcaccgacacatataattacatgc--aatattattaattttctcaaactattatcattgttgacgtgtccgtgcttcatagaaaacattcatca |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4615 |
gttcattcacctacacatataattacatgcttaatattattaattttctcaaactattatcattgttgacgtatccgtgcttcatagaaaacattcatca |
4714 |
T |
|
| Q |
107 |
caaattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacc |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715 |
caaattaatggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacc |
4814 |
T |
|
| Q |
207 |
tgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgagaagatc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4815 |
tgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatcttataggatgagaagatc |
4914 |
T |
|
| Q |
307 |
gaagatccgccgtagcaatatccttcaaacaatcacaac |
345 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4915 |
gaagatccgcagcagcaatatccttcaaacaatcacaac |
4953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 540
Target Start/End: Complemental strand, 27125481 - 27125440
Alignment:
| Q |
499 |
tcttaaactcagccatatacctttgataatcacctttcatct |
540 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
27125481 |
tcttaaactcagcaagatacctatgataatcacctttcatct |
27125440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 39356413 - 39356450
Alignment:
| Q |
249 |
tcataatagaaaaccgagaaattcaaagccaaacccaa |
286 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
39356413 |
tcataatagaaaactgagaaattcaaagccagacccaa |
39356450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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