View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393R-Insertion-4 (Length: 612)
Name: NF2393R-Insertion-4
Description: NF2393R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393R-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 145 - 500
Target Start/End: Complemental strand, 30767240 - 30766885
Alignment:
| Q |
145 |
ctgcatacatatgtatgaatgtatctaattcttggattatagtccttactgtttgatgaatgctgataataacacagttcatttgataactggagaagtg |
244 |
Q |
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| T |
30767240 |
ctgcatacatacgtatgaatgtatctaattcttggattatagtccttactgtttgatgaatgctgataataacacagttcatttgataactggtgaagtg |
30767141 |
T |
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| Q |
245 |
aaaaccataagttattataccatgtcggtccatggtgaatcatgcttcagaaaaaatagaatatagtaagatttagaatatttttctccaatattagaaa |
344 |
Q |
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| T |
30767140 |
aaaaccataagttattataccatgtcggtccatggtgaatcatgcttcagaaaaaatagaatatagtaagatttagaatatttttctccaatattagaaa |
30767041 |
T |
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| Q |
345 |
agaataaggttttttattttacaatccaacgaaaaaagttgatatgttcagttttggttattttttatataatttttcaactttgttaccgtggtttgaa |
444 |
Q |
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| T |
30767040 |
agaataaggttttttattttacaatccaacgaaaaaagttgatatgttcagttttggttattttttatataatttttcaactttgttaccgtggtttgca |
30766941 |
T |
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| Q |
445 |
ttagattggatatgctaatacgattatatttttaatggttaggtcggtcggaagtc |
500 |
Q |
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| T |
30766940 |
ttagattggatatgctaatacgattatatttgtaatggttaggtcggtcggaagtc |
30766885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 502 - 612
Target Start/End: Complemental strand, 30766846 - 30766736
Alignment:
| Q |
502 |
tcaatgataaattgacatttcgtctatctactaaaaaatatgatcgacatttctatgcattttggcattgtgaacttatgataaaatatgtttagtggtt |
601 |
Q |
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| T |
30766846 |
tcaatggtaaattgatatttcgtctatctactaaaaaattggattgacatttctttgcattttggcattgtgaacttatgataaaatatgtttagtggtt |
30766747 |
T |
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| Q |
602 |
tgttagatttg |
612 |
Q |
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| T |
30766746 |
tgttagatttg |
30766736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 30767377 - 30767317
Alignment:
| Q |
9 |
gcatcttatta-atggatggatcattctctatcaagattaatggacattggacacattctt |
68 |
Q |
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| T |
30767377 |
gcatcttattatatggatggatcattctctatcaagattaatggacattggacacattctt |
30767317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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