View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393R-Insertion-5 (Length: 498)
Name: NF2393R-Insertion-5
Description: NF2393R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393R-Insertion-5 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 173 - 498
Target Start/End: Original strand, 33166486 - 33166810
Alignment:
| Q |
173 |
aactctaacatgaaacattcatgtgtatattgagtatagattgaatatgcatctcccatgacatcactataagctaccacnnnnnnncttcttggatagg |
272 |
Q |
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| T |
33166486 |
aactctaacatgaaacattcatgtgtatattgagtatagatt-aatatgcatctcccatgacatcactctaagctaccactttttttcttcttggatagg |
33166584 |
T |
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| Q |
273 |
cttgcttgtagcaccctccaaattttttaattatggaattcaccttcgaccatcgagattttagttgtactgggccctttgcaaagaaatgaccacaatg |
372 |
Q |
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| T |
33166585 |
cttgcttgtagcaccctccaaattttttaattatggaattcaccttcgaccatcgagattttagttgtactggtccctttgcaaggaaataaccacaatg |
33166684 |
T |
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| Q |
373 |
ttcattataaccatctgcaattcttttgccaaaaaacatttgctctttgatttacccccgtacaactgcatccttagaaatatttagccatgattggatg |
472 |
Q |
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| T |
33166685 |
ttcattataaccatctgcaattcttttgccaaaaaacatttgctctttgatttacccctgtacaactgcatccttagaaatatttagccatgattggatg |
33166784 |
T |
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| Q |
473 |
aggattttatcttcctctggggtgaa |
498 |
Q |
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| T |
33166785 |
aggagtttatcttcctctggggtgaa |
33166810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 33161360 - 33161524
Alignment:
| Q |
8 |
accagattattttcagttgggttgtaatcgtaactttctggcatgcacgaattagaagaggatgaggatgagtatgctccagaagccgaagtctttgttc |
107 |
Q |
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| T |
33161360 |
accacattattttcagttgggttgtaatcgtaactttctggcatgcacgaattagaagaggatggg------tatgctccagaagccgaagtctttgttc |
33161453 |
T |
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| Q |
108 |
ttttactagctccttcaagtgattggtttgactatttaggttcatcttttaacaatctccacgcaaactct |
178 |
Q |
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| T |
33161454 |
ttttactagctccttcaagtgattggtttgactatttaggttcatcttttaacaatctccacacaaactct |
33161524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 464
Target Start/End: Original strand, 49281300 - 49281391
Alignment:
| Q |
370 |
atgttcattataaccatctgcaattcttttgccaaaaaacatttgctctttgatttacccccgtacaactgcatccttagaaatatttagccatg |
464 |
Q |
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| T |
49281300 |
atgttcattataaccatttgtaattattt-gctaaagagcatttgctctttgaattacccc--tacaaatgcatccgtagaaatatttagccatg |
49281391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 34313286 - 34313183
Alignment:
| Q |
77 |
gagtatgctccagaagccgaagtctttgttcttttactagctccttcaagtgattggtttgactatttaggttcatcttttaacaatctccacgcaaact |
176 |
Q |
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||||||||||| ||||| ||| |||| ||||| |||| || |||||| |||| |||||| |||||||||||||||| ||||||| ||| ||| ||| |
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| T |
34313286 |
gagtatgctcctgaagcagaaatcttggttctcttaccgcctacttcaaatgatgtatttgaccatttaggttcatctttcaacaatcgccatgcatact |
34313187 |
T |
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| Q |
177 |
ctaa |
180 |
Q |
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|||| |
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| T |
34313186 |
ctaa |
34313183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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