View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393R-Insertion-6 (Length: 490)
Name: NF2393R-Insertion-6
Description: NF2393R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393R-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 9 - 490
Target Start/End: Original strand, 38486386 - 38486866
Alignment:
| Q |
9 |
cttgtttggatcaatgtacttgtccatgtataaaaatttataacattttgcagtctccatttttggatgtataaaaatttataacatttgattttataac |
108 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486386 |
cttgtttgtctcaatgtacttgtccatgtataaaaatttataacattttgcagtctccatttttggatgtataaaaatttataacatttgattttataac |
38486485 |
T |
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| Q |
109 |
cactaataaaatacaatgtacttgtccttgtttgaatcatccactaagtgatcccacaagtcaaaataaatagcatgagaaaatacattggaaaaactca |
208 |
Q |
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| T |
38486486 |
cactaataaaatacaatgtacttgtccttgtttggatcatccactaagtgatcccacaagtcaaaataaatagcatgagaaaatacattggaaaaactca |
38486585 |
T |
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| Q |
209 |
atctcgcagtaaaaagaggtaaaatctaaaataaattttattaaacattttttctttgagagtaacaaagaaattgtattaacactgaagagatgagtag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |
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| T |
38486586 |
atctcgcagtaaaaagaggtaaaatctaaaataaattttattaaacattttttcttt--gagtaacaaagaaattttattaacactgaagagattagtag |
38486683 |
T |
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| Q |
309 |
aagtggtatttgactaagactataagatt-agtataagtagtactcaatttcaagggcctcggtgataactttttgtatcaattctattacctctcccaa |
407 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486684 |
aagtggtatttgactaagactataagattaagtataagtagtactcaatttcaagggcctcggtgataactttttgtatcaattctattacctctcccaa |
38486783 |
T |
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| Q |
408 |
ttgggggaccttttctttaaatatgtagtcatttattgtcttccaaattatctacaacgttgtaggtcataccaacaacacac |
490 |
Q |
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| T |
38486784 |
ttgggggaccttttctttaaatatgtagtcatttattgtcttccaaattatctacaacgttgtaggtcataccaacaacacac |
38486866 |
T |
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