View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393R-Insertion-7 (Length: 426)
Name: NF2393R-Insertion-7
Description: NF2393R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393R-Insertion-7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 118 - 426
Target Start/End: Complemental strand, 51358045 - 51357738
Alignment:
| Q |
118 |
tcagcatctttaaaaggaggattgtctgtgttttaaaacatgaagggaaagagttgtcatatcattatctttaaagggagtggagagttatttaatctta |
217 |
Q |
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| T |
51358045 |
tcagcatctttaaaaggaggattgtctgtgttttaaaacatgaaggaaaagagttgcaatatcattatctttaaagggagtggagagttatttaatctta |
51357946 |
T |
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| Q |
218 |
caataattaatnnnnnnncaaatatatgagttataatattcatgtatacaagtctatgacgggaagtagagatattagaattcatagtgtgcattttaag |
317 |
Q |
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| T |
51357945 |
caataattaataaaaaaacaaatatatgagttataatattcatgtatacaagtctatgacgggaagtagagatattagaattcatagtgtgcattttaag |
51357846 |
T |
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| Q |
318 |
gttatccnnnnnnnnnntaacttcaatatggtgaaacttcaagtgtcgtgtgagtccgtctgtatcaccatcactagattatgatgcaaatcgttatgta |
417 |
Q |
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| T |
51357845 |
gttatccaaaaaaaaaa-aacttcaatatggtgaaacttcaagtgtcgtgtgagtccctctgtatcaccatcactagattatgatgcaaatcgttatgta |
51357747 |
T |
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| Q |
418 |
ttagttaaa |
426 |
Q |
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| T |
51357746 |
ttagttaaa |
51357738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 51358171 - 51358137
Alignment:
| Q |
27 |
ccgatagatgaattggacaataaatgtcattttgg |
61 |
Q |
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| T |
51358171 |
ccgatagatgaattggacaataaatgtcattttgg |
51358137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 34656972 - 34656907
Alignment:
| Q |
339 |
ttcaatatggtgaaacttca-agtgtcgtgtgagtccgtctgtatcaccatcactagattatgatg |
403 |
Q |
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| T |
34656972 |
ttcaatatggtgaaacttcacaatatcgggtgagtccctctctatcaccatcactagtttctgatg |
34656907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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