View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2393_high_1 (Length: 347)
Name: NF2393_high_1
Description: NF2393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 10482798 - 10483120
Alignment:
| Q |
13 |
cagtaaatagttgtaactctttaagtattattctctgctgtaccaaacaatgaatttttacaccagcatcttggcaatgactaatttgaacagtaatata |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10482798 |
cagtaaatagttgtaactcttaaagtattattctctgctgtaccaaacaatgaatttctacaccagcttcttggcaatgactaatttgaacagtaatata |
10482897 |
T |
|
| Q |
113 |
taacaaattacatccagcaataatagtaataatatccatagccatacatataagataaataaccaaaagcattatgacatggactcaagacagccactta |
212 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||||| ||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
10482898 |
taacaaattacattcagcaataagagtaagaatatccataaccatacatatac-ataaataacaaaaagctttatgacattgactcaagacagccactta |
10482996 |
T |
|
| Q |
213 |
tataataaaaagtagtcttttcattgatgtctatctcataccaaaacattcatacactagcagcacttcccaataattgttaaacttctactcatgtaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
10482997 |
tataataaaaagtagtcttttcattgatgtctatctcataccaaaacatttatacactagcagcacttcccaataattgttgaacttctgctcatgtaag |
10483096 |
T |
|
| Q |
313 |
ccctaattaagcactatgtttcat |
336 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
10483097 |
ccctaattaagcactatgtctcat |
10483120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 30 - 317
Target Start/End: Complemental strand, 4952835 - 4952548
Alignment:
| Q |
30 |
tctttaagtattattctctgctgtaccaaacaatgaatttttacaccagcatcttggcaatgactaatttgaacagtaatatataacaaattacatccag |
129 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||||||||| | ||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4952835 |
tctttaagtaatatcctctgctgtagcaaacaatgaatttctgcactagcatcctggcaatgactaatttgaacagtaataaataacaaattacatccag |
4952736 |
T |
|
| Q |
130 |
caataatagtaataatatccatagccatacatataagataaataaccaaaagcattatgacatggactcaagacagccacttatataataaaaagtagtc |
229 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
4952735 |
taaaaatagtaataatatccatagccatacatatagaataaataaccaaaagtttcatgacatggactctagacagccacttatatgataaaaagtagtc |
4952636 |
T |
|
| Q |
230 |
ttttcattgatgtctatctcataccaaaacattcatacactagcagcacttcccaataattgttaaacttctactcatgtaagcccta |
317 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4952635 |
ttttcattaatgtctatctcataccaaaacattcatacactatcagcacttcccaataattgttaaacttctgctcatgtaagcccta |
4952548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University