View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393_high_3 (Length: 249)
Name: NF2393_high_3
Description: NF2393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48721209 - 48721444
Alignment:
| Q |
1 |
taagcctagaaaacttgtgaatgactgaatttaagagactctgtcaaggacgagccctcttctgctttcaccctgggtcgaacaagaagttctaccacgt |
100 |
Q |
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| T |
48721209 |
taagcctagaaaacttgcgaatgactgaatttaagagactctgtcaaggacgagccctcttctgctttcaccttgggtcgaacaagaagttctaccacgt |
48721308 |
T |
|
| Q |
101 |
ctagaaatttgataacgtgatcccaggccagggaccataacactcacctatatatcttgttcttgatggtagtgtggtaagtcaatttttcaactcatgt |
200 |
Q |
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| T |
48721309 |
ctagaaatttgataacgtgatcccaggccagggaccataacactcacctatatatcttgttcttgatggtagtgcggtaagtcaatttttcaactcatgt |
48721408 |
T |
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| Q |
201 |
tgtgaagggtcatagtcagattctatcatctttctt |
236 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
48721409 |
tgtgaagggtcatagtcagattctatgatctttctt |
48721444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 48720800 - 48721001
Alignment:
| Q |
1 |
taagcctagaaaacttgtgaatgactgaatttaagagactctgtcaaggacgagccctcttctgctttcaccctgggtcgaacaagaagttctaccacgt |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48720800 |
taagcctagaaaacttgcgaatgactgaatttaagagactctgtcaaggacgagccctcttctgctttcaccttgggtcgaacaagaagttctaccacgt |
48720899 |
T |
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| Q |
101 |
ctagaaatttgataacgtgatcccaggccagggaccataacactcacctatatatcttgttcttgatggtagtgtggtaagtcaatttttcaactcatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48720900 |
ctagaaatttgataacgtgatcccaggccagggaccataacactcacctatatatcttgttcttgatggtagtgtggtaagtcaatttttcaactcatgt |
48720999 |
T |
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| Q |
201 |
tg |
202 |
Q |
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|| |
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| T |
48721000 |
tg |
48721001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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