View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393_low_1 (Length: 364)
Name: NF2393_low_1
Description: NF2393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 7911420 - 7911754
Alignment:
| Q |
17 |
cactgttggtagaagacatgcatgatttgtctttattagagatatatgacggctagtaattgtaattagagttaagattatgttaagcagagttgattaa |
116 |
Q |
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| T |
7911420 |
cactgttggtagaagacctgcatgatttgtctttattagagatatatgacagctagtaattgtaattagagttaagattatgttaagcagagttgattaa |
7911519 |
T |
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| Q |
117 |
gataggtagttagatttcatctttgccttattgtaacagtatataaaatactcctccgtcgctaacttttccaatcaatatgaatctcaacttcatattc |
216 |
Q |
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| T |
7911520 |
gataggtagttagatttcatctttgccttattgtaacagtatataaa-tactcctccgtagctaacttttccaatcaat--gaatctcaacttcatattc |
7911616 |
T |
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| Q |
217 |
tgttacagagtttctctctcttccccttgagcttcaagctcttgaagattcatcaatggtgattgatgaattctaacagtctttgtatgatcctttaaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7911617 |
tgttacagagtttctctctcttccccttgagcttcaagctcttgaagattcattaatggtgattgatgaattctaacagtctttgtatgatcctttaaca |
7911716 |
T |
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| Q |
317 |
tccctgcactttttatcttgcattctgattctcctttg |
354 |
Q |
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| T |
7911717 |
tccctgcactttttatcttgcattctgattctcatttg |
7911754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 7758154 - 7758102
Alignment:
| Q |
304 |
tgatcctttaacatccctgcactttttatcttgcattctgattctcctttgct |
356 |
Q |
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| T |
7758154 |
tgatcctttaacatcactgcactttttaacttgcgttctcattctcatttgct |
7758102 |
T |
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