View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2393_low_3 (Length: 288)

Name: NF2393_low_3
Description: NF2393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2393_low_3
NF2393_low_3
[»] chr6 (13 HSPs)
chr6 (114-260)||(24154321-24154467)
chr6 (112-263)||(10163414-10163564)
chr6 (144-260)||(13003014-13003130)
chr6 (150-272)||(34992141-34992262)
chr6 (150-272)||(28712162-28712283)
chr6 (114-216)||(11744381-11744483)
chr6 (160-256)||(4031245-4031341)
chr6 (150-256)||(242233-242338)
chr6 (150-257)||(16142354-16142461)
chr6 (150-240)||(6038782-6038872)
chr6 (150-257)||(18713519-18713626)
chr6 (205-260)||(14767091-14767146)
chr6 (150-260)||(17296404-17296514)
[»] chr8 (20 HSPs)
chr8 (116-260)||(15341077-15341221)
chr8 (116-260)||(15430142-15430286)
chr8 (116-260)||(15521446-15521590)
chr8 (150-262)||(18847222-18847334)
chr8 (148-247)||(22455303-22455402)
chr8 (113-181)||(6017419-6017487)
chr8 (150-262)||(22450260-22450372)
chr8 (150-272)||(41652199-41652318)
chr8 (190-256)||(19709723-19709789)
chr8 (150-240)||(32351994-32352084)
chr8 (150-240)||(32368655-32368745)
chr8 (197-257)||(22713898-22713958)
chr8 (154-228)||(28862671-28862745)
chr8 (196-257)||(12669066-12669127)
chr8 (150-256)||(10600386-10600492)
chr8 (207-257)||(24681046-24681096)
chr8 (204-257)||(25094867-25094920)
chr8 (150-211)||(28291771-28291832)
chr8 (150-217)||(11030468-11030536)
chr8 (204-256)||(13110003-13110055)
[»] chr1 (10 HSPs)
chr1 (145-260)||(25018444-25018559)
chr1 (150-272)||(16083441-16083563)
chr1 (150-273)||(44787540-44787663)
chr1 (150-272)||(33379543-33379665)
chr1 (153-272)||(11821602-11821721)
chr1 (148-272)||(24633947-24634071)
chr1 (197-257)||(17615068-17615128)
chr1 (150-262)||(13966195-13966308)
chr1 (205-257)||(22608133-22608185)
chr1 (205-257)||(33102842-33102894)
[»] chr2 (13 HSPs)
chr2 (148-257)||(17162197-17162306)
chr2 (114-263)||(23388923-23389070)
chr2 (160-272)||(20515755-20515867)
chr2 (144-240)||(28760852-28760949)
chr2 (150-261)||(13370171-13370282)
chr2 (150-273)||(16467498-16467623)
chr2 (150-255)||(17636519-17636624)
chr2 (150-255)||(17676377-17676482)
chr2 (150-217)||(15438238-15438305)
chr2 (207-257)||(29891564-29891614)
chr2 (203-272)||(21498352-21498421)
chr2 (205-257)||(18929128-18929180)
chr2 (205-257)||(25520679-25520731)
[»] chr3 (15 HSPs)
chr3 (150-262)||(53589314-53589427)
chr3 (150-272)||(44451077-44451198)
chr3 (150-273)||(15987357-15987480)
chr3 (150-262)||(4022931-4023043)
chr3 (153-262)||(1744877-1744986)
chr3 (154-262)||(25466271-25466379)
chr3 (143-256)||(48895840-48895953)
chr3 (151-259)||(45280154-45280262)
chr3 (150-262)||(25320985-25321104)
chr3 (150-257)||(14132288-14132395)
chr3 (185-261)||(4026610-4026686)
chr3 (205-257)||(4765961-4766013)
chr3 (192-239)||(5495370-5495417)
chr3 (150-215)||(17132537-17132605)
chr3 (168-240)||(1085529-1085601)
[»] chr5 (11 HSPs)
chr5 (150-272)||(10235833-10235954)
chr5 (150-262)||(9422901-9423012)
chr5 (150-263)||(28619443-28619556)
chr5 (150-261)||(24364366-24364479)
chr5 (153-253)||(22987533-22987633)
chr5 (150-261)||(24308846-24308960)
chr5 (197-257)||(24878165-24878225)
chr5 (190-257)||(31533262-31533329)
chr5 (150-257)||(25667473-25667581)
chr5 (205-256)||(17167564-17167615)
chr5 (210-262)||(25951117-25951169)
[»] chr7 (7 HSPs)
chr7 (150-272)||(11994128-11994249)
chr7 (153-272)||(28036950-28037069)
chr7 (151-262)||(12468716-12468828)
chr7 (154-256)||(7524935-7525037)
chr7 (185-262)||(7948223-7948300)
chr7 (148-216)||(1545825-1545893)
chr7 (189-256)||(18046266-18046333)
[»] scaffold0003 (1 HSPs)
scaffold0003 (150-272)||(89551-89673)
[»] chr4 (7 HSPs)
chr4 (151-263)||(16288527-16288639)
chr4 (185-262)||(43851328-43851405)
chr4 (205-257)||(4732422-4732474)
chr4 (150-262)||(24924652-24924771)
chr4 (189-256)||(6337797-6337864)
chr4 (150-215)||(24476143-24476208)
chr4 (189-257)||(9354703-9354771)
[»] scaffold0039 (1 HSPs)
scaffold0039 (150-250)||(33440-33540)
[»] scaffold0167 (1 HSPs)
scaffold0167 (150-260)||(704-814)
[»] scaffold0142 (1 HSPs)
scaffold0142 (204-257)||(20349-20402)
[»] scaffold0337 (1 HSPs)
scaffold0337 (150-257)||(4356-4464)
[»] scaffold0002 (1 HSPs)
scaffold0002 (207-257)||(376452-376502)
[»] scaffold0024 (1 HSPs)
scaffold0024 (205-260)||(39168-39223)
[»] scaffold1102 (1 HSPs)
scaffold1102 (204-257)||(1172-1225)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 114 - 260
Target Start/End: Original strand, 24154321 - 24154467
Alignment:
Q  114 cgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaaca 213  Q
    ||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||||||    
T  24154321 cgaaaaacttttactttcatacaaaaaaccgttgtattcataaagcaacctatgaatatgatgaacactcatgaattttctggaaaaagattgcacaaca 24154420  T
Q  214 tgtcccagggtttctggtttgatcctgtttgtaataatcaaaactag 260  Q
     |||| ||| ||| ||||||||||||  |||||||||||||||||||    
T  24154421 agtcctaggatttatggtttgatcctacttgtaataatcaaaactag 24154467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 112 - 263
Target Start/End: Original strand, 10163414 - 10163564
Alignment:
Q  112 gccgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaa 211  Q
    |||||||||| |||||||||||| |||| || ||| ||||||||||||| ||||||||||||||||| |||| || |||||||| ||| |||||||||||    
T  10163414 gccgaaagacgtttactttcatacaaaa-actgttttattcataaagcagcctatgaatatgatgaacactcatgaattttctggaaacagattgcacaa 10163512  T
Q  212 catgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtct 263  Q
    ||| ||  ||  ||||||||||||||||| ||||||||||||||||||||||    
T  10163513 catatcttagaatttctggtttgatcctgcttgtaataatcaaaactagtct 10163564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 13003014 - 13003130
Alignment:
Q  144 gttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgttt 243  Q
    |||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||||||||||||| |||| | | ||||||||||||| ||| ||    
T  13003014 gttgtattcataaagcaacctatgaatatgatgaacgctcaggtattttctgaaaaaagattgcacaacaggtcctaagatttctggtttgattctgctt 13003113  T
Q  244 gtaataatcaaaactag 260  Q
    |||||||||||||||||    
T  13003114 gtaataatcaaaactag 13003130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 34992262 - 34992141
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||||||||||||||||||| | || |||||||| || ||||| ||||||||| || ||| ||| |||||| |||||||||| ||||||||    
T  34992262 ttcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaatattgcacaatat-tcctaggatttctgatttgatcctgcttgtaata 34992164  T
Q  250 atcaaaactagtctggttgttta 272  Q
    || ||||||||||  ||||||||    
T  34992163 attaaaactagtcatgttgttta 34992141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 28712283 - 28712162
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||||||||||||| ||||| | || |  | ||| || |||||||||||||||||||||| ||| |||||||||||||| ||  |||||||    
T  28712283 ttcataaagcaacctatgaatattatgaacattcatacactttatggaaaaagattgcacaacatgtcctaggatttctggtttgatcttgcctgtaata 28712184  T
Q  250 atcaaaactagtctggttgttta 272  Q
    ||| |||||||||| ||||||||    
T  28712183 atc-aaactagtctcgttgttta 28712162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 11744483 - 11744381
Alignment:
Q  114 cgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaaca 213  Q
    |||||||| |||||||||||| |||| ||||||||||||||||| |||||||| ||||||||||| |||   ||||||| |||||| |||| | ||||||    
T  11744483 cgaaagacttttactttcatacaaaaaaccgttgtattcataaaacaacctataaatatgatgaacactaaagtattttatgaaaagagatcgaacaaca 11744384  T
Q  214 tgt 216  Q
    |||    
T  11744383 tgt 11744381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 4031245 - 4031341
Alignment:
Q  160 aacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 256  Q
    ||||||||||||||||||| | ||| | | |||||  |||||||||||||||||||| | ||| |||||||||||||| || ||||| |||||||||    
T  4031245 aacctatgaatatgatgaacattcgagcactttctagaaaaagattgcacaacatgttctaggatttctggtttgatcatgcttgtagtaatcaaaa 4031341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 242233 - 242338
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||| ||||||||||||||||||| | ||  | | |||||| ||||| |||||||||||||||| | || ||||||||||||| || ||||||||    
T  242233 ttcataaagtaacctatgaatatgatgaacattcaagcactttctggaaaaatattgcacaacatgtccta-ggattctggtttgatcttgcttgtaata 242331  T
Q  250 atcaaaa 256  Q
    | |||||    
T  242332 accaaaa 242338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 16142461 - 16142354
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    |||||||| |||||||||||| ||||||  ||||    | |||||| |||||  ||||||||||||||| ||| ||||| |||||||| |||||||||||    
T  16142461 ttcataaaccaacctatgaatctgatgaccactcactcactttctggaaaaactttgcacaacatgtcctaggatttctagtttgatcatgtttgtaata 16142362  T
Q  250 atcaaaac 257  Q
    | ||||||    
T  16142361 accaaaac 16142354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 6038872 - 6038782
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 240  Q
    |||||||||||| |||||||||||||||| | ||  | |||||||| ||||||||||||||| ||  || ||| ||||| |||||||||||    
T  6038872 ttcataaagcaaactatgaatatgatgaacattcaagcattttctggaaaaagattgcacaatattccctaggatttctagtttgatcctg 6038782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 18713626 - 18713519
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcg---tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgta 246  Q
    |||||||||| |||||||||| |||||||  | ||   |||||||||| |||||  ||||| |||||||||| ||| |||||||||||||| || |||||    
T  18713626 ttcataaagctacctatgaatttgatgaa--cgcgaactgtattttcttaaaaac-attgcgcaacatgtccaaggatttctggtttgatcttgcttgta 18713530  T
Q  247 ataatcaaaac 257  Q
    |||||||||||    
T  18713529 ataatcaaaac 18713519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 14767091 - 14767146
Alignment:
Q  205 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactag 260  Q
    |||||||||||||| ||  |||||||||||||| || |||||||||||||||||||    
T  14767091 tgcacaacatgtcctagaatttctggtttgatcgtgcttgtaataatcaaaactag 14767146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 17296404 - 17296514
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||||| ||||| |||||||  |||    || ||||| |||||  |||||||||||||   ||| ||||| ||||||||||| ||||||||    
T  17296404 ttcataaagcaacctctgaatttgatgaacgctcactcatattctggaaaaaatttgcacaacatgttgtaggatttcttgtttgatcctgattgtaata 17296503  T
Q  250 atcaaaactag 260  Q
    | |||||||||    
T  17296504 accaaaactag 17296514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 260
Target Start/End: Original strand, 15341077 - 15341221
Alignment:
Q  116 aaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 215  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||| |||    
T  15341077 aaagacatttactttcatacaaaatatcgttgtattcataaagcaacctatgaatatgatgaacactcatgtattttctggaaaatgattgcacaatatg 15341176  T
Q  216 tcccagggtttctggtttgatcctgtttgtaataatcaaaactag 260  Q
    ||  ||| ||| ||||||||||||  ||||||| |||||||||||    
T  15341177 tcataggatttttggtttgatcctacttgtaattatcaaaactag 15341221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 260
Target Start/End: Original strand, 15430142 - 15430286
Alignment:
Q  116 aaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 215  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||| |||    
T  15430142 aaagacatttactttcatacaaaatatcgttgtattcataaagcaacctatgaatatgatgaacactcatgtattttctggaaaatgattgcacaatatg 15430241  T
Q  216 tcccagggtttctggtttgatcctgtttgtaataatcaaaactag 260  Q
    ||  ||| ||| ||||||||||||  ||||||| |||||||||||    
T  15430242 tcataggatttttggtttgatcctacttgtaattatcaaaactag 15430286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 260
Target Start/End: Original strand, 15521446 - 15521590
Alignment:
Q  116 aaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 215  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||| |||    
T  15521446 aaagacatttactttcatacaaaatatcgttgtattcataaagcaacctatgaatatgatgaacactcatgtattttctggaaaatgattgcacaatatg 15521545  T
Q  216 tcccagggtttctggtttgatcctgtttgtaataatcaaaactag 260  Q
    ||  ||| ||| ||||||||||||  ||||||| |||||||||||    
T  15521546 tcataggatttttggtttgatcctacttgtaattatcaaaactag 15521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 18847334 - 18847222
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    |||||||||||||||||||||||  |||| | || |||||||| || |||||||||||||||||||||  ||| ||||| ||||||||||  ||||||||    
T  18847334 ttcataaagcaacctatgaatatattgaacattcatgtattttttggaaaaagattgcacaacatgtcataggatttctagtttgatccttcttgtaata 18847235  T
Q  250 atcaaaactagtc 262  Q
    |||||||||||||    
T  18847234 atcaaaactagtc 18847222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 22455303 - 22455402
Alignment:
Q  148 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 247  Q
    ||||||||||||||||||||||||||||||| | || |||| ||| || |||||||||||||||||| ||| ||| ||||||||||||||||| ||||||    
T  22455303 tattcataaagcaacctatgaatatgatgaacattcatgtactttttggaaaaagattgcacaacatatcctaggatttctggtttgatcctgcttgtaa 22455402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 6017487 - 6017419
Alignment:
Q  113 ccgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatac 181  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||    
T  6017487 ccgaaagacatttactttcatataaaagatcgttgtattcataaagcaacctatgaatataataaatac 6017419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 22450260 - 22450372
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    |||||||| |||||||||||||||||||| | || |  | ||| || |||||||||||| |||||||| |||| ||| |||||||||| || ||||||||    
T  22450260 ttcataaaacaacctatgaatatgatgaagattcatacaatttttggaaaaagattgcataacatgtcacaggatttatggtttgatcttgcttgtaata 22450359  T
Q  250 atcaaaactagtc 262  Q
    |||||||||||||    
T  22450360 atcaaaactagtc 22450372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 41652199 - 41652318
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||||||||||||||||||| | ||    | |||||  |||||||||||||||  ||||  | | ||||||||||||||||| ||||||||    
T  41652199 ttcataaagcaacctatgaatatgatgaacattccac-actttcttgaaaaagattgcacaa--tgtcatatgatttctggtttgatcctgcttgtaata 41652295  T
Q  250 atcaaaactagtctggttgttta 272  Q
    |||||||||||||| ||||||||    
T  41652296 atcaaaactagtcttgttgttta 41652318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 19709723 - 19709789
Alignment:
Q  190 tttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 256  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||| |||||||||||    
T  19709723 tttctgaaaaaagattgcacaacatgtcctaggatttatggtttgatcctgcttgcaataatcaaaa 19709789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 32352084 - 32351994
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 240  Q
    ||||||||  ||||||||||||||| ||| | || |||||||| |  ||||||||  |||||||||||| ||| |||||||||||||||||    
T  32352084 ttcataaattaacctatgaatatgacgaacattcatgtattttatagaaaaagatgtcacaacatgtcctaggatttctggtttgatcctg 32351994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 32368745 - 32368655
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 240  Q
    ||||||||  ||||||||||||||| ||| | || |||||||| |  ||||||||  |||||||||||| ||| |||||||||||||||||    
T  32368745 ttcataaattaacctatgaatatgacgaacattcatgtattttatagaaaaagatgtcacaacatgtcctaggatttctggtttgatcctg 32368655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 22713898 - 22713958
Alignment:
Q  197 aaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    ||||| ||| |||||||||| | ||||||||||||||||||||| |||||||||| |||||    
T  22713898 aaaaacatttcacaacatgttctagggtttctggtttgatcctgcttgtaataataaaaac 22713958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 28862671 - 28862745
Alignment:
Q  154 taaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttct 228  Q
    ||||| || |||||||||||||||| | || |||||||| ||||||| |||||||||||||| || ||| |||||    
T  28862671 taaagtaaactatgaatatgatgaacattcatgtattttgtgaaaaacgattgcacaacatgccctaggatttct 28862745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 12669066 - 12669127
Alignment:
Q  196 aaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    ||||| || |||||||||||| | | | ||||||||||||||||| ||||||||||||||||    
T  12669066 aaaaacgaatgcacaacatgttctatgatttctggtttgatcctgcttgtaataatcaaaac 12669127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 10600386 - 10600492
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||| ||||||||||| |||||||  ||||   ||||| || ||||| ||| |||||||||||| | | |||||| | ||||| || ||||||||    
T  10600386 ttcataaagtaacctatgaatttgatgaaagctcgctcattttatggaaaaacattacacaacatgtcctacgatttctgctatgatcatgcttgtaata 10600485  T
Q  250 atcaaaa 256  Q
    | |||||    
T  10600486 accaaaa 10600492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 24681046 - 24681096
Alignment:
Q  207 cacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    |||||||||||  ||| ||||||||||||| ||| ||||||||||||||||    
T  24681046 cacaacatgtcataggatttctggtttgattctgcttgtaataatcaaaac 24681096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 25094920 - 25094867
Alignment:
Q  204 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    |||||||||||| || ||  ||||||||||||||||| ||||||||||| ||||    
T  25094920 ttgcacaacatgccctagaatttctggtttgatcctgcttgtaataatctaaac 25094867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 28291771 - 28291832
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaa 211  Q
    ||||||||| ||||||||||||||||||| | |  || ||||| || |||||||||||||||    
T  28291771 ttcataaagtaacctatgaatatgatgaacatttatgcattttatggaaaaagattgcacaa 28291832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 11030536 - 11030468
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct-gaaaaaagattgcacaacatgtc 217  Q
    ||||||||||||||||||||| ||| ||| |||||   ||||||| ||||||  |||||||||||||||    
T  11030536 ttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 11030468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 13110055 - 13110003
Alignment:
Q  204 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 256  Q
    ||||||||||||||| ||| ||||||||||||| ||  ||||||||| |||||    
T  13110055 ttgcacaacatgtcctaggatttctggtttgatgctacttgtaataaccaaaa 13110003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 25018559 - 25018444
Alignment:
Q  145 ttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttg 244  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||||||||||||||| ||| |||||||||||||| || |||    
T  25018559 ttgtattcataaagcaacctatgaatatgatgaacactcgcgtattttctagaaaaagattgcacaacatgtcctaggatttctggtttgatcatgcttg 25018460  T
Q  245 taataatcaaaactag 260  Q
    ||||||||||||||||    
T  25018459 taataatcaaaactag 25018444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 16083563 - 16083441
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||||||||||| ||||||| | |  | |||||| || |||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  16083563 ttcataaagcaacctatgaatttgatgaacattaatctattttatggaaaaagattgcataacatgtcctagggtttctggtttgatcctgtttgtaata 16083464  T
Q  250 atcaaaactagtctggttgttta 272  Q
    |||||||||||||| ||||||||    
T  16083463 atcaaaactagtcttgttgttta 16083441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 273
Target Start/End: Original strand, 44787540 - 44787663
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||| ||||||||||||||| | || | | |||  ||||||||||||||||||||||||  | | ||| ||||||||||||  ||||||||    
T  44787540 ttcataaagcaacttatgaatatgatgaacattcatatctttcttgaaaaaagattgcacaacatgtcatatgatttatggtttgatcctagttgtaata 44787639  T
Q  250 atcaaaactagtctggttgtttat 273  Q
    |||||||||||||| |||||||||    
T  44787640 atcaaaactagtcttgttgtttat 44787663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 33379543 - 33379665
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    |||||||||||||||||| |||||||||| | || | || ||| |||||||||||||||||| |||||| | | |||||| |||| ||||| ||||||||    
T  33379543 ttcataaagcaacctatggatatgatgaacattcatatactttatgaaaaaagattgcacaatatgtcctaagatttctgatttggtcctgcttgtaata 33379642  T
Q  250 atcaaaactagtctggttgttta 272  Q
    |||||||||| ||| ||||||||    
T  33379643 atcaaaactaatcttgttgttta 33379665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 11821721 - 11821602
Alignment:
Q  153 ataaagcaacctatgaatatgatgaat----actcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 248  Q
    |||||||||||||||||||||||||||    | || |||||||| ||||||||||||||||||| ||||| | | ||||||||||||  |   |||||||    
T  11821721 ataaagcaacctatgaatatgatgaatgaatattcatgtattttatgaaaaaagattgcacaacttgtccta-gatttctggtttgaatc---ttgtaat 11821626  T
Q  249 aatcaaaactagtctggttgttta 272  Q
    ||||||||||||||  ||||||||    
T  11821625 aatcaaaactagtcatgttgttta 11821602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 272
Target Start/End: Original strand, 24633947 - 24634071
Alignment:
Q  148 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 247  Q
    ||||||| ||| ||||||||||||||||||| | || |  | |||||  ||||| |||||| ||||||||  ||| ||| |||| |||||||| ||||||    
T  24633947 tattcatcaagaaacctatgaatatgatgaacattcatacaatttctagaaaaaaattgcataacatgtcaaaggatttatggtgtgatcctgcttgtaa 24634046  T
Q  248 taatcaaaactagtctggttgttta 272  Q
    ||||||||||||||||  |||||||    
T  24634047 taatcaaaactagtcttattgttta 24634071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 17615128 - 17615068
Alignment:
Q  197 aaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||| |||||    
T  17615128 aaaaacattgcacaacatgtcctaggatttctggtttgatcctgcttgtaataattaaaac 17615068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 13966308 - 13966195
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgca-caacatgtcccagggtttctggtttgatcctgtttgtaat 248  Q
    |||||||| |||||||||||||||||||| | || |||||||| |  |||||||||| | |||||| ||  | | ||||||||||||||||| ||  |||    
T  13966308 ttcataaaacaacctatgaatatgatgaacattcatgtattttttagaaaaagattgtaccaacatttcataagatttctggtttgatcctgcttagaat 13966209  T
Q  249 aatcaaaactagtc 262  Q
    ||||| ||||||||    
T  13966208 aatcataactagtc 13966195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 22608133 - 22608185
Alignment:
Q  205 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||| ||||    
T  22608133 tgcacaacatgtcctaggatttctggtttgatcatgtttgtaataatcgaaac 22608185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 33102894 - 33102842
Alignment:
Q  205 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    |||||||||||||| | | ||||||||||||||||| ||||||||||||||||    
T  33102894 tgcacaacatgtcctaagatttctggtttgatcctgcttgtaataatcaaaac 33102842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 17162197 - 17162306
Alignment:
Q  148 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 247  Q
    ||||||||||||||||||||||||||||||| | || |||||||| || |||||||||||||||||||||  ||| ||||||||||||||||| ||||||    
T  17162197 tattcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaagattgcacaacatgtcataggatttctggtttgatcctgcttgtaa 17162296  T
Q  248 taatcaaaac 257  Q
    ||||||||||    
T  17162297 taatcaaaac 17162306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 114 - 263
Target Start/End: Complemental strand, 23389070 - 23388923
Alignment:
Q  114 cgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaaca 213  Q
    ||||||||||| ||||||||  |||| |  ||||||||  ||||||||||||||||||||||||| ||||| ||||| | | ||||||||||||||||||    
T  23389070 cgaaagacatt-actttcatgcaaaaaattgttgtatttgtaaagcaacctatgaatatgatgaacactcgcgtattcttt-aaaaaagattgcacaaca 23388973  T
Q  214 tgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtct 263  Q
    ||||| ||| |||||||||||||| || ||||||||||||||||||||||    
T  23388972 tgtcctaggatttctggtttgatcatgcttgtaataatcaaaactagtct 23388923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 20515755 - 20515867
Alignment:
Q  160 aacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaacta 259  Q
    ||||||||||||||||||| | || |  | |||||| ||||||||| |||||||||||| | | ||||||||||||||||| ||||||||||||||||||    
T  20515755 aacctatgaatatgatgaacattcatacactttctggaaaaagattacacaacatgtcctaagatttctggtttgatcctgcttgtaataatcaaaacta 20515854  T
Q  260 gtctggttgttta 272  Q
    ||||  |||||||    
T  20515855 gtcttattgttta 20515867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 28760852 - 28760949
Alignment:
Q  144 gttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttct-gaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 240  Q
    ||||||||||| | ||||||||||||||||||||||||||  | ||||||| || |||||||| ||||||| | |||| | ||||| |||||||||||    
T  28760852 gttgtattcattaggcaacctatgaatatgatgaatactcacgcattttctggataaaagattacacaacaagacccaagatttctagtttgatcctg 28760949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 13370282 - 13370171
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||  || |||||||||||||||| | ||   |||||| || |||||||||||||||||||| | ||  |||||| |||||||||| ||||||||    
T  13370282 ttcataaaataaactatgaatatgatgaacattcacatattttttggaaaaagattgcacaacatgttctagaatttctgatttgatcctgcttgtaata 13370183  T
Q  250 atcaaaactagt 261  Q
    || |||| ||||    
T  13370182 attaaaattagt 13370171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 273
Target Start/End: Original strand, 16467498 - 16467623
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctg--aaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 247  Q
    |||||||| ||| |||||| ||||||||| | ||||| ||||| ||  |||||| ||||||||| |||||| | | ||||||||||||||  | ||||||    
T  16467498 ttcataaaacaaactatgagtatgatgaacattcgtgcattttttggaaaaaaatattgcacaatatgtcctatgatttctggtttgatctcgcttgtaa 16467597  T
Q  248 taatcaaaactagtctggttgtttat 273  Q
    |||| || ||||||||  ||||||||    
T  16467598 taataaacactagtcttattgtttat 16467623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 17636624 - 17636519
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||| |||| || ||||||| ||||    | ||||||||||||  |||||||| || ||| ||| ||||||||||||||||| ||||||||    
T  17636624 ttcataaagcaacttatggatctgatgaacactcactcactttctgaaaaaactttgcacaatatatcctaggatttctggtttgatcctgcttgtaata 17636525  T
Q  250 atcaaa 255  Q
    | ||||    
T  17636524 accaaa 17636519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 17676482 - 17676377
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||| |||| || ||||||| ||||    | ||||||||||||  |||||||| || ||| ||| ||||||||||||||||| ||||||||    
T  17676482 ttcataaagcaacttatggatctgatgaacactcactcactttctgaaaaaactttgcacaatatatcctaggatttctggtttgatcctgcttgtaata 17676383  T
Q  250 atcaaa 255  Q
    | ||||    
T  17676382 accaaa 17676377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 15438238 - 15438305
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtc 217  Q
    |||||||||||||||| |||  |||| || | || |  ||||||||||||||||||||||||||||||    
T  15438238 ttcataaagcaacctaagaacttgattaacattcatacattttctgaaaaaagattgcacaacatgtc 15438305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 29891564 - 29891614
Alignment:
Q  207 cacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    |||||||||||| ||| ||| ||||||||||||| ||||||||| ||||||    
T  29891564 cacaacatgtcctaggatttatggtttgatcctgcttgtaataaccaaaac 29891614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 21498352 - 21498421
Alignment:
Q  203 attgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtctggttgttta 272  Q
    |||||||||||| ||  ||| ||||| |||||| | || |||||||||||||| |||||||| |||||||    
T  21498352 attgcacaacatatcataggatttctagtttgaccgtgcttgtaataatcaaagctagtctgcttgttta 21498421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 18929180 - 18929128
Alignment:
Q  205 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    |||||||||||||| ||| | ||||||||| ||||| | ||||||||||||||    
T  18929180 tgcacaacatgtcctaggatctctggtttggtcctgctcgtaataatcaaaac 18929128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 25520679 - 25520731
Alignment:
Q  205 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    |||||||||||||| ||| |||  |||||||||||| ||||||||| ||||||    
T  25520679 tgcacaacatgtcctaggattttgggtttgatcctgcttgtaataaccaaaac 25520731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 53589314 - 53589427
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaa-aagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 248  Q
    ||||||||||||| ||||||||||||||| | || ||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||  |||||||    
T  53589314 ttcataaagcaacatatgaatatgatgaacattcatgtattttctgaaaaaaagattgcacaaaatgtcctaggatttctggtttgatcctacttgtaat 53589413  T
Q  249 aatcaaaactagtc 262  Q
    ||||||||||||||    
T  53589414 aatcaaaactagtc 53589427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 44451077 - 44451198
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||||||||||||||||||| | || |||||||| || ||||||||||||||| || ||| ||| |||||| ||||||| || ||||||||    
T  44451077 ttcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaagattgcacaatat-tcctaggatttctgatttgatcttgcttgtaata 44451175  T
Q  250 atcaaaactagtctggttgttta 272  Q
    |||||||||||||  ||||||||    
T  44451176 atcaaaactagtcatgttgttta 44451198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 15987480 - 15987357
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    |||||||||||||||||||| |||||||| | || | |||||| || |||||||||||||||||||||| ||  ||||| ||||||||||  ||||||||    
T  15987480 ttcataaagcaacctatgaaaatgatgaacattcatatattttatggaaaaagattgcacaacatgtcctagaatttctagtttgatcctacttgtaata 15987381  T
Q  250 atcaaaactagtctggttgtttat 273  Q
    | |||||||| ||| |||||||||    
T  15987380 accaaaactaatcttgttgtttat 15987357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 4022931 - 4023043
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    |||||||| |||||||||||||||||||| | || |||||||| |  |||||||||||||||||||||  | |  |||||||||||||||| ||||||||    
T  4022931 ttcataaaacaacctatgaatatgatgaacattcatgtattttttagaaaaagattgcacaacatgtcataagaattctggtttgatcctgcttgtaata 4023030  T
Q  250 atcaaaactagtc 262  Q
    |||| || |||||    
T  4023031 atcataaatagtc 4023043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 1744986 - 1744877
Alignment:
Q  153 ataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatc 252  Q
    |||||||||||||| ||||||||||| | || |  ||||| ||||||||||||||||||||| ||| | | |||||  ||| ||||| ||||||||||||    
T  1744986 ataaagcaacctataaatatgatgaacattcatacattttttgaaaaaagattgcacaacatatcctaagatttctaatttaatcctatttgtaataatc 1744887  T
Q  253 aaaactagtc 262  Q
    ||||||||||    
T  1744886 aaaactagtc 1744877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 25466379 - 25466271
Alignment:
Q  154 taaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatca 253  Q
    |||| |||||||||||||||||||| | || | ||||||||   ||||||||||| ||||||||| ||| |||   ||||||||||| ||||||||||||    
T  25466379 taaaacaacctatgaatatgatgaacattcatatattttctaggaaaagattgcaaaacatgtcctaggattttcagtttgatcctgcttgtaataatca 25466280  T
Q  254 aaactagtc 262  Q
    |||||||||    
T  25466279 aaactagtc 25466271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 48895953 - 48895840
Alignment:
Q  143 cgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtt 242  Q
    |||||||||||||||||||| |||||||||||| || ||||    ||||| || |||||||||||||| ||||||| |   ||||| ||||||||||| |    
T  48895953 cgttgtattcataaagcaacgtatgaatatgataaacactcacacattttttggaaaaagattgcacatcatgtcctaaaatttctagtttgatcctgct 48895854  T
Q  243 tgtaataatcaaaa 256  Q
    ||||||||| ||||    
T  48895853 tgtaataataaaaa 48895840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 45280154 - 45280262
Alignment:
Q  151 tcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataa 250  Q
    |||||||||||||||||||||||||||| |    | ||||||||| |||||||||||||||||| ||| | | ||||| | |||||| |  |||||||||    
T  45280154 tcataaagcaacctatgaatatgatgaacatatatatattttctggaaaaagattgcacaacatatcctacgatttctaggttgatcgttcttgtaataa 45280253  T
Q  251 tcaaaacta 259  Q
    |||||||||    
T  45280254 tcaaaacta 45280262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 25321104 - 25320985
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaa-------aaaagattgcacaacatgtcccagggtttctggtttgatcctgtt 242  Q
    ||||||||||||||||||||||||||||| | || |  ||||| ||||       ||||||||||||||||||||| | | ||| |||||||| | || |    
T  25321104 ttcataaagcaacctatgaatatgatgaacattcatacattttttgaagaaaaaaaaaagattgcacaacatgtcctacgatttttggtttgaccatgct 25321005  T
Q  243 tgtaataatcaaaactagtc 262  Q
    ||||||||||||||||||||    
T  25321004 tgtaataatcaaaactagtc 25320985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 14132288 - 14132395
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||| ||||||||||| ||||||| | ||    | ||| || ||||| ||||||||||||||||  || ||||| ||||||||||| ||||||||    
T  14132288 ttcataaagaaacctatgaatttgatgaacattcactcactttttggaaaaacattgcacaacatgtccttggatttctagtttgatcctgcttgtaata 14132387  T
Q  250 atcaaaac 257  Q
    | ||||||    
T  14132388 accaaaac 14132395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 4026610 - 4026686
Alignment:
Q  185 tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagt 261  Q
    |||||||| || |||||||||| |||| |||||| |   |||||||||||||| || || |||||||||||||||||    
T  4026610 tgtattttatggaaaaagattgtacaatatgtcctaaaatttctggtttgatcttgcttataataatcaaaactagt 4026686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 4765961 - 4766013
Alignment:
Q  205 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    |||||||||||||| ||| ||||||||||| ||||| ||||||||| ||||||    
T  4765961 tgcacaacatgtcctaggatttctggtttgttcctgcttgtaataaccaaaac 4766013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 5495417 - 5495370
Alignment:
Q  192 tctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcct 239  Q
    ||||||||||  ||||||||||||||| ||| ||||||||||||||||    
T  5495417 tctgaaaaaactttgcacaacatgtcctaggatttctggtttgatcct 5495370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 17132605 - 17132537
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct---gaaaaaagattgcacaacatg 215  Q
    ||||||||| || |||||||||||||||||| || ||||||||||    ||||||||||||| ||||||    
T  17132605 ttcataaaggaaactatgaatatgatgaatattcatgtattttctataaaaaaaagattgcataacatg 17132537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 1085601 - 1085529
Alignment:
Q  168 aatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 240  Q
    ||||||||||| | || | ||||||||  ||||  |||||||||||||||| ||| ||||| |||||||||||    
T  1085601 aatatgatgaacattcatatattttctagaaaatcattgcacaacatgtcctaggatttctagtttgatcctg 1085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 10235954 - 10235833
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    |||||||||||| ||||||| |||||||| | || |||||||| || |||||||||||||||||||||| ||  |||||||||||||| || ||||||||    
T  10235954 ttcataaagcaaactatgaa-atgatgaacattcatgtattttttggaaaaagattgcacaacatgtcctagaatttctggtttgatcatgcttgtaata 10235856  T
Q  250 atcaaaactagtctggttgttta 272  Q
    ||||||||||||||  |||||||    
T  10235855 atcaaaactagtcttattgttta 10235833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 9423012 - 9422901
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||| ||||||||||||||||||| | || |||||||| || ||||||||||||||| || ||| ||| |||||| |||||||||| ||||||||    
T  9423012 ttcataaagtaacctatgaatatgatgaacattcatgtattttatggaaaaagattgcacaatat-tcctaggatttctgatttgatcctgcttgtaata 9422914  T
Q  250 atcaaaactagtc 262  Q
    |||||||||||||    
T  9422913 atcaaaactagtc 9422901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 28619443 - 28619556
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||| ||||||||||||||| | ||    |||||||| |||| ||||||||||||||||| | | ||||||||||||||||| ||||||||    
T  28619443 ttcataaagcaacttatgaatatgatgaacattcacacattttctggaaaaggattgcacaacatgtcctatgatttctggtttgatcctgcttgtaata 28619542  T
Q  250 atcaaaactagtct 263  Q
    || |||||||||||    
T  28619543 attaaaactagtct 28619556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 24364366 - 24364479
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct--gaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 247  Q
    |||||||||||||||||||||||||||||   ||    ||||| |  |||||||||||||| ||||||| | ||| || |||||||||||||| ||||||    
T  24364366 ttcataaagcaacctatgaatatgatgaacgttcacacatttttttggaaaaaagattgcagaacatgttctaggattcctggtttgatcctgcttgtaa 24364465  T
Q  248 taatcaaaactagt 261  Q
    ||||||||||||||    
T  24364466 taatcaaaactagt 24364479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 22987633 - 22987533
Alignment:
Q  153 ataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatc 252  Q
    |||||||||||||||||||||||||| | ||    | |||||| |||||||||||||||||||||  | | ||||| ||||||||||| |||| ||||||    
T  22987633 ataaagcaacctatgaatatgatgaacattcacacactttctggaaaaagattgcacaacatgtcatatgatttctagtttgatcctgcttgttataatc 22987534  T
Q  253 a 253  Q
    |    
T  22987533 a 22987533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 24308960 - 24308846
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct--gaaaaaaga-ttgcacaacatgtcccagggtttctggtttgatcctgtttgta 246  Q
    |||||||||||||||||||||||||||||   ||    ||||| |  ||||||||| ||||| ||||||| | ||| || |||||||||||||| |||||    
T  24308960 ttcataaagcaacctatgaatatgatgaacgttcacacatttttttggaaaaaagaattgcagaacatgttctaggattcctggtttgatcctgcttgta 24308861  T
Q  247 ataatcaaaactagt 261  Q
    |||||||||||||||    
T  24308860 ataatcaaaactagt 24308846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 24878225 - 24878165
Alignment:
Q  197 aaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    ||||| |||||||||||||||| ||| |||||| |||||||||| |||||||||| |||||    
T  24878225 aaaaacattgcacaacatgtcctaggatttctgctttgatcctgcttgtaataattaaaac 24878165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 31533262 - 31533329
Alignment:
Q  190 tttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    ||||||||||||  ||||||||||||||| ||| |||| |||| ||||||| ||||||||| ||||||    
T  31533262 tttctgaaaaaactttgcacaacatgtcctaggatttcgggttcgatcctgcttgtaataaccaaaac 31533329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 25667473 - 25667581
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaa-gattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 248  Q
    ||||||||||||||||||||| |||||||  |||    ||||||||||||||  |||||||||||  ||| | | ||| | ||||||||||| |||||||    
T  25667473 ttcataaagcaacctatgaatttgatgaactctcactcattttctgaaaaaaccattgcacaacagctcctaagatttttagtttgatcctgcttgtaat 25667572  T
Q  249 aatcaaaac 257  Q
    || ||||||    
T  25667573 aaccaaaac 25667581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 17167564 - 17167615
Alignment:
Q  205 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 256  Q
    |||||||||||||| ||| ||| |||||| |||||| |||||||||||||||    
T  17167564 tgcacaacatgtcctaggatttatggttttatcctgcttgtaataatcaaaa 17167615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 25951169 - 25951117
Alignment:
Q  210 aacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtc 262  Q
    ||||||||| ||| | ||||||||||||||| |||| |||||||| |||||||    
T  25951169 aacatgtcctaggatctctggtttgatcctgcttgttataatcaatactagtc 25951117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 11994128 - 11994249
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||||||||||||||||||| | || |||||||| || ||||| ||||||||| || ||| ||| |||||| |||||||||| ||||||||    
T  11994128 ttcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaatattgcacaatat-tcctaggatttctgatttgatcctgcttgtaata 11994226  T
Q  250 atcaaaactagtctggttgttta 272  Q
    || ||||||||||  ||||||||    
T  11994227 ataaaaactagtcatgttgttta 11994249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 28037069 - 28036950
Alignment:
Q  153 ataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatc 252  Q
    |||||||||||||||||||||||||| | || |  | ||||| ||||||||||||||||||| ||| | | |||||| |||||||||  |||||||||||    
T  28037069 ataaagcaacctatgaatatgatgaacattcatacactttctaaaaaaagattgcacaacatatcctaagatttctgatttgatcctacttgtaataatc 28036970  T
Q  253 aaaactagtctggttgttta 272  Q
    ||||||||| | ||||||||    
T  28036969 aaaactagttttgttgttta 28036950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 12468828 - 12468716
Alignment:
Q  151 tcataaagcaacctatgaatatgatgaatactcgtgtattttctg-aaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||  |||||||||||||||| | || | |||||| || ||||||||||||| ||||||||| ||| ||||||| |||| | || ||||||||    
T  12468828 tcataaagcagtctatgaatatgatgaacattcatatattttatggaaaaaagattgcataacatgtcctaggatttctggattgaccatgcttgtaata 12468729  T
Q  250 atcaaaactagtc 262  Q
    |||||||||||||    
T  12468728 atcaaaactagtc 12468716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 7524935 - 7525037
Alignment:
Q  154 taaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatca 253  Q
    ||||||||||||||||| ||||||| ||||   || |||||||||||| ||||| || ||||||  ||| ||||||||||||||||  ||||||||| ||    
T  7524935 taaagcaacctatgaatttgatgaacactcacttactttctgaaaaaacattgcgcaccatgtcttaggatttctggtttgatcctacttgtaataacca 7525034  T
Q  254 aaa 256  Q
    |||    
T  7525035 aaa 7525037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 7948223 - 7948300
Alignment:
Q  185 tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtc 262  Q
    |||||||| || |||||||||||||  | ||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  7948223 tgtattttatggaaaaagattgcacgccgtgtcctaggatttatggtttgatcctgtttgtaataatcaagactagtc 7948300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 1545825 - 1545893
Alignment:
Q  148 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgt 216  Q
    |||||||||| |||| ||||||||| ||||| | |  |||||||||| |||||||||||||||| ||||    
T  1545825 tattcataaaacaacttatgaatataatgaacatttatgtattttctaaaaaaagattgcacaatatgt 1545893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 18046333 - 18046266
Alignment:
Q  189 ttttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 256  Q
    ||||||| |||||  ||||||||||||||| ||  ||||| ||||||||||| ||||||||| |||||    
T  18046333 ttttctggaaaaactttgcacaacatgtcctagtatttctagtttgatcctgcttgtaataaccaaaa 18046266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 89673 - 89551
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    |||||||| |||||||||||||||||||| | || | |||||| || ||||||||||| ||| |||||| ||| |||||| ||| |||||  ||||||||    
T  89673 ttcataaaacaacctatgaatatgatgaacattcatatattttatggaaaaagattgcgcaatatgtcctaggatttctgctttaatcctccttgtaata 89574  T
Q  250 atcaaaactagtctggttgttta 272  Q
    ||||||||||||||  |||||||    
T  89573 atcaaaactagtcttattgttta 89551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 16288639 - 16288527
Alignment:
Q  151 tcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataa 250  Q
    ||||||| |||||||||||| ||||||| | || |  | |||||| |||||||||||||||||||||  | |||||||||||| ||  |||||||| |||    
T  16288639 tcataaaacaacctatgaatttgatgaacaatcatacactttctggaaaaagattgcacaacatgtctgaaggtttctggtttaatgttgtttgtattaa 16288540  T
Q  251 tcaaaactagtct 263  Q
    |||||||||||||    
T  16288539 tcaaaactagtct 16288527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 43851405 - 43851328
Alignment:
Q  185 tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtc 262  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||| ||| |||||| |||||||||| ||||| ||||    
T  43851405 tgtattttctgaaaaaagattgcgcaacatgtcctaggatttctgattttatcctgcttgtaataataaaaacaagtc 43851328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 4732474 - 4732422
Alignment:
Q  205 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  4732474 tgcacaacatgtcctaggatttctggtttgatcctgtttgtaataaccaaaac 4732422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 24924771 - 24924652
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaa-------aaaagattgcacaacatgtcccagggtttctggtttgatcctgtt 242  Q
    ||||||||||||||| ||||||||||||| | |  |||||||||||||       |||| |||| |||| |||||| ||  |||||||||||||| || |    
T  24924771 ttcataaagcaacctgtgaatatgatgaacatttatgtattttctgaacaaacaaaaaaaattgtacaatatgtcctagtatttctggtttgatcatgct 24924672  T
Q  243 tgtaataatcaaaactagtc 262  Q
    | ||||||||||||||||||    
T  24924671 tataataatcaaaactagtc 24924652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 6337864 - 6337797
Alignment:
Q  189 ttttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 256  Q
    |||||||||||||  ||||||||||||||| | | ||||||||||||| |||| |||||||| |||||    
T  6337864 ttttctgaaaaaactttgcacaacatgtcctaagatttctggtttgattctgtctgtaataaccaaaa 6337797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 24476208 - 24476143
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 215  Q
    |||||||||||| |||||| ||||||||| | ||    |||||||| |||||||||||||||||||    
T  24476208 ttcataaagcaaactatgactatgatgaacattcaaacattttctggaaaaagattgcacaacatg 24476143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 9354703 - 9354771
Alignment:
Q  189 ttttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    ||||||| ||||| |||||||||||||||| |   |||||||||||||| ||  |||||||| ||||||    
T  9354703 ttttctggaaaaacattgcacaacatgtcctataatttctggtttgatcatgaatgtaataaccaaaac 9354771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 33440 - 33540
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||||||||| | ||||||| ||||    | |||||| |||||  ||||||||||||||  ||| ||||||||||||||||| ||||||||    
T  33440 ttcataaagcaacctatgagtctgatgaacactcactcactttctggaaaaactttgcacaacatgtcataggatttctggtttgatcctgcttgtaata 33539  T
Q  250 a 250  Q
    |    
T  33540 a 33540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 704 - 814
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 249  Q
    ||||||||||||||||||||  || | || | || |  ||||| || |||||||||||||||||||||| ||| ||||| |||||| | || ||||||||    
T  704 ttcataaagcaacctatgaacttggttaacattcatacattttatggaaaaagattgcacaacatgtcctaggatttctagtttgaacttgcttgtaata 803  T
Q  250 atcaaaactag 260  Q
    |||||| ||||    
T  804 atcaaagctag 814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 20402 - 20349
Alignment:
Q  204 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    ||||||||||||||||| | ||||||||||||||||| ||||||||| ||||||    
T  20402 ttgcacaacatgtcccaagatttctggtttgatcctgcttgtaataaccaaaac 20349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 4464 - 4356
Alignment:
Q  150 ttcataaagcaacctatgaatatgatgaatactcg-tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 248  Q
    ||||||||||||||||||||| |||||||  |    | |||||||| |||||  | | ||||||| |||| ||| ||||||||||||||||| |||||||    
T  4464 ttcataaagcaacctatgaatttgatgaacgcaaactctattttcttaaaaacaaatccacaacacgtcctaggatttctggtttgatcctgcttgtaat 4365  T
Q  249 aatcaaaac 257  Q
    |||||||||    
T  4364 aatcaaaac 4356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 376452 - 376502
Alignment:
Q  207 cacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    |||||||||||| ||| ||||||||||||||||  ||||||||||||||||    
T  376452 cacaacatgtcctaggatttctggtttgatcctccttgtaataatcaaaac 376502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 39168 - 39223
Alignment:
Q  205 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactag 260  Q
    |||||||||||||| | | ||||| ||||||||||| ||||||||| |||||||||    
T  39168 tgcacaacatgtcctaagatttctagtttgatcctgcttgtaataaccaaaactag 39223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 1172 - 1225
Alignment:
Q  204 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 257  Q
    ||||||||||||||| ||  |||||||||||||| || ||||||||| ||||||    
T  1172 ttgcacaacatgtcctagaatttctggtttgatcttgcttgtaataaccaaaac 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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