View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393_low_4 (Length: 274)
Name: NF2393_low_4
Description: NF2393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 5289837 - 5289589
Alignment:
| Q |
11 |
catagggacacaattactgagttgaatcaagatcaggaaaataaagaaggttctgaaaatgaggttttggctaaacatcaaagtgagggagagatttcta |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5289837 |
cataaggacacaattactgagttgaatcaagatcaggaaaataaagaaggttctgaaaatgaggttttggctaaacatcaaagtgagggagagatttcta |
5289738 |
T |
|
| Q |
111 |
gtatcaagggtccaattggagcacagcttacacaagaggaagaaaaagtgattggtaatgttggatggaagccattttgggattatattaattattccaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5289737 |
gtatcaagggtccaattggagcacagcttacacaagaggaagaaaaagtgattggtaatgttggatggaagccattttgggattatattaattattccaa |
5289638 |
T |
|
| Q |
211 |
agggacatccatgttgtgtttaatcatgttagcacaatctggttttatg |
259 |
Q |
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|||||||| |||| ||||| | ||||||||| ||||||||||||||||| |
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| T |
5289637 |
agggacattcatgctgtgtatgatcatgttatcacaatctggttttatg |
5289589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 5281735 - 5281557
Alignment:
| Q |
81 |
ctaaacatcaaagtgagggagagatttctagtatcaagggtccaattggagcacagcttacacaagaggaagaaaaagtgattggtaatgttggatggaa |
180 |
Q |
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||||| || |||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5281735 |
ctaaaaataaaagtgagggagagatttctagcatcaaggatccaattggtacacaacttacacaagaggaagaaaaagtgattggtaacgttggatggaa |
5281636 |
T |
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| Q |
181 |
gccattttgggattatattaattattccaaagggacatccatgttgtgtttaatcatgttagcacaatctggttttatg |
259 |
Q |
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| T |
5281635 |
gccattttgggattatattaattattccaaagggacatccatgttgtgtttaatcatgttagcacaatctggttttatg |
5281557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 81 - 256
Target Start/End: Complemental strand, 14948972 - 14948797
Alignment:
| Q |
81 |
ctaaacatcaaagtgagggagagatttctagtatcaagggtccaattggagcacagcttacacaagaggaagaaaaagtgattggtaatgttggatggaa |
180 |
Q |
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||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14948972 |
ctaaaaatcaaagtgaaggagagatttctagcatcaagggtccaattggtgcacagcttacacaagaggaagaaaaagtgactggtaatgttggatggaa |
14948873 |
T |
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| Q |
181 |
gccattttgggattatattaattattccaaagggacatccatgttgtgtttaatcatgttagcacaatctggtttt |
256 |
Q |
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| T |
14948872 |
gccattctgggattatgttaactattccaaagggacatccatgatgtgtttcatcatgttagcacaatctgctttt |
14948797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 15126386 - 15126547
Alignment:
| Q |
87 |
atcaaagtgagggagagatttctagtatcaagggtccaattggagcacagcttacacaagaggaagaaaaagtgattggtaatgttggatggaagccatt |
186 |
Q |
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||||||| || |||||||||||||| ||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
15126386 |
atcaaagcgaaggagagatttctagcatccagggttcaattggtgctcagcttacacaagaggaagaaaaagtgattggtaatgttggatggaagccact |
15126485 |
T |
|
| Q |
187 |
ttgggattatattaattattccaaagggacatccatgttgtgtttaatcatgttagcacaat |
248 |
Q |
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| T |
15126486 |
ttgggattatattaattattccaatgggacattgatgtcgtgtttggtcatattaggacaat |
15126547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 231
Target Start/End: Original strand, 5307614 - 5307764
Alignment:
| Q |
81 |
ctaaacatcaaagtgagggagagatttctagtatcaagggtccaattggagcacagcttacacaagaggaagaaaaagtgattggtaatgttggatggaa |
180 |
Q |
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||||| ||||||| ||||||| | ||| ||||||||||||||||| || ||| | ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5307614 |
ctaaaaatcaaagcgagggagtggttttaagtatcaagggtccaataggtgcaaaacttacacaagaggaagaaaaagtgattggcaatgttggatggaa |
5307713 |
T |
|
| Q |
181 |
gccattttgggattatattaattattccaaagggacatccatgttgtgttt |
231 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||| ||||||| |
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| T |
5307714 |
gccattttgggattatgttaattattccaaagggacattcatgctgtgttt |
5307764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 5314539 - 5314744
Alignment:
| Q |
47 |
gaaaataaagaaggttctgaaaatgaggttttggctaaac------atcaaagtgagggagagatttctagtatcaagggtccaattggagcacagctta |
140 |
Q |
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||||||||||||| ||| |||||||| ||||||||||| | |||| | |||||| |||||||||| || ||||| ||||| | ||| |||| |
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| T |
5314539 |
gaaaataaagaagtttcggaaaatgatgttttggctaatccacaaaatcagaatgagggggagatttctaccat---gggtcaaattgaggtacaactta |
5314635 |
T |
|
| Q |
141 |
cacaagaggaagaaaaagtgattggtaatgttggatggaagccattttgggattatattaattattccaaagggacatccatgttgtgtttaatcatgtt |
240 |
Q |
| |
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|| |||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||| || ||||| || ||| |||||||||||| |||||||| |
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| T |
5314636 |
caaaagaagaagaaaaagtgattggtgatgttggttggaagccattctgggattatatttctttttccaggggatcattcatgttgtgttttatcatgtt |
5314735 |
T |
|
| Q |
241 |
agcacaatc |
249 |
Q |
| |
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||||||||| |
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| T |
5314736 |
agcacaatc |
5314744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 14949069 - 14949002
Alignment:
| Q |
17 |
gacacaattactgagttgaatcaagatcaggaaaataaagaaggttctgaaaatgaggttttggctaa |
84 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||| | |||||||||||||||||||||| |||| |
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| T |
14949069 |
gacacaattaatgagttgaatcaagatagtgaaaataatggaggttctgaaaatgaggttttgtctaa |
14949002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 5307511 - 5307584
Alignment:
| Q |
11 |
catagggacacaattactgagttgaatcaagatcaggaaaataaagaaggttctgaaaatgaggttttggctaa |
84 |
Q |
| |
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|||| ||||||||||| |||||||||||||| | | ||||||||| || ||||||||||||||||||| |||| |
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| T |
5307511 |
cataaggacacaattaatgagttgaatcaagttaatgaaaataaaagagattctgaaaatgaggttttgtctaa |
5307584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 31525764 - 31525642
Alignment:
| Q |
137 |
cttacacaagaggaagaaaaagtgattggtaatgttggatggaagccattttgggattatattaattattccaaagggacatccatgttgtgtttaatca |
236 |
Q |
| |
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|||||| ||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||| || ||| ||| ||||||| || |
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| T |
31525764 |
cttacaaaagaggaagaaaaagagattggtgatgttggctggaagccattctgggattatatatcttattccaagggatcattgatgctgtgttttattg |
31525665 |
T |
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| Q |
237 |
tgttagcacaatctggttttatg |
259 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
31525664 |
tgttagcacaatctgcttttatg |
31525642 |
T |
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