View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2393_low_9 (Length: 236)
Name: NF2393_low_9
Description: NF2393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2393_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 28003665 - 28003500
Alignment:
| Q |
1 |
tagattaattgatggttaattaaattcttggtcagagacaacaaccattcaccgactcttgaaaacacaacccaacaatcaacactagttttaaaatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28003665 |
tagattaattgatggttaattaaattcttggtcagagacaacaaccattcaccgactcttgaaaacacaacccaacaatcaacacttgttttaaaatttc |
28003566 |
T |
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| Q |
101 |
cctcatttctcaaaggatatttccgtcattgcaaccaatatnnnnnnncaccttattaagacgatc |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28003565 |
cctcatttctcaaaggatatttccgtcattgcaaccaatataaaaaagcaccttattaagacgatc |
28003500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 28060967 - 28060802
Alignment:
| Q |
1 |
tagattaattgatggttaattaaattcttggtcagagacaacaaccattcaccgactcttgaaaacacaacccaacaatcaacactagttttaaaatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28060967 |
tagattaattgatggttaattaaattcttggtcagagacaacaaccattcaccgactcttgaaaacacaacccaacaatcaacacttgttttaaaatttc |
28060868 |
T |
|
| Q |
101 |
cctcatttctcaaaggatatttccgtcattgcaaccaatatnnnnnnncaccttattaagacgatc |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28060867 |
cctcatttctcaaaggatatttccgtcattgcaaccaatataaaaaagcaccttattaagacgatc |
28060802 |
T |
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