View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2394_high_4 (Length: 269)
Name: NF2394_high_4
Description: NF2394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2394_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 33077417 - 33077318
Alignment:
| Q |
75 |
ttcaagtctacaacttctagattccttttcatcccacgtaccaaattctcgtt-ttttctaaatacactataatagaaaaataaaatcgttgccactcca |
173 |
Q |
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| T |
33077417 |
ttcaagtctacaacttctagattccttttcatcccacgtaccaaactctcgtttttttctaaatacactataatagaaaaataaaatcgttgccactcca |
33077318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 33076602 - 33076557
Alignment:
| Q |
224 |
ctttatcttattctccttttctttattttgagctctttttcatctc |
269 |
Q |
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| T |
33076602 |
ctttatcttattctccttttctttattttgagctcttttttatctc |
33076557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 33083364 - 33083326
Alignment:
| Q |
78 |
aagtctacaacttctagattccttttcatcccacgtacc |
116 |
Q |
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| T |
33083364 |
aagtctacaacttctagattctttttcatcccacatacc |
33083326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 33083293 - 33083205
Alignment:
| Q |
133 |
taaatacactataatagaaaaataaaatcgttgccactccactgcttaataactcactccaaactcagccatcttgatcactactgttt |
221 |
Q |
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| T |
33083293 |
taaatacagtaaaatagaaaactaaaattgttgtccctccactgcataataacacacttcaagttctcccctcttgatcactagtgttt |
33083205 |
T |
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