View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2394_low_1 (Length: 397)
Name: NF2394_low_1
Description: NF2394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2394_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 18395062 - 18395210
Alignment:
| Q |
15 |
ggataattgtattttcgttttggagtgaatgtagggttcatgttgtggttgggcttttgaggccacagttgatcacgaggtgggaacaaagaattgtgga |
114 |
Q |
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| T |
18395062 |
ggatagttgtattttcgttttggagtgaatgtagggttcatgttgtagttgggcttttgaggccacagttgatcacgtggtgggaacaaagaattgtgga |
18395161 |
T |
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| Q |
115 |
ataagataagatagtgcaattccagacatttgtcaattaataggaacta |
163 |
Q |
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| T |
18395162 |
ataagataagatagtgcaattccagacatttgtcaattaataggaacta |
18395210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 18395246 - 18395397
Alignment:
| Q |
199 |
ctcatcaatgagatatataataatgggaagttttttataatataattattgttattgtcnnnnnnntataatataattattggtaggttttgtatagctg |
298 |
Q |
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| T |
18395246 |
ctcatcaatgagatatataataattggaagttttttataatataattattgttattgtcaaaaaaatataatataattattggtaggttttggatagctg |
18395345 |
T |
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| Q |
299 |
ggattccaccttcatgtgataaatcgataaggactctggcattttatttgta |
350 |
Q |
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| T |
18395346 |
ggattccaccttcatgtgataaatcgataaggactctggcatattatttgta |
18395397 |
T |
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