View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2394_low_2 (Length: 392)
Name: NF2394_low_2
Description: NF2394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2394_low_2 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 101503 - 101436
Alignment:
| Q |
225 |
ttgaaaagttgtatccatcggaataaatagaaattttcatgaaatgatgccaagttctattattttct |
292 |
Q |
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| T |
101503 |
ttgaaaagttgtatccattggaataaatagaaattttcatgaaatgatgccaagttttattattttct |
101436 |
T |
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Target: scaffold0014; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 101418 - 101349
Alignment:
| Q |
316 |
tgcgagtttaatacttgctgagattgtatcattttt--gtatcaaatttggaacagacttatatattctt |
383 |
Q |
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| T |
101418 |
tgcgagtttaatacttactgagattgtattatttttttgtatcaaatttggaacagacttatattttctt |
101349 |
T |
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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 6617834 - 6617765
Alignment:
| Q |
222 |
tagttgaaaagttgtatccatcggaataaatagaaattttcatgaaatgatgccaagttctattattttc |
291 |
Q |
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| T |
6617834 |
tagttgaaaagttgtgtccattggaataaatagaaattttcatgaaatgatgccaactttaattattttc |
6617765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 6617729 - 6617655
Alignment:
| Q |
310 |
taatactgcgagtttaatacttgctgagattgtatcatttttgta-tcaaatttggaacagacttatatattctt |
383 |
Q |
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| T |
6617729 |
taatattgtgagtttaatatttactgagaatgtattatttttttactcaaatttggaacagacttatattttctt |
6617655 |
T |
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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 22706219 - 22706287
Alignment:
| Q |
222 |
tagttgaaaagttgtatccatcggaataaatagaaattttcatgaaatgatgccaagttctattatttt |
290 |
Q |
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| T |
22706219 |
tagttgaaaagttgtgtcgattggaataaatagaagttgtcttgaaatggtgacaacttttattatttt |
22706287 |
T |
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 15155155 - 15155222
Alignment:
| Q |
223 |
agttgaaaagttgtatccatcggaataaatagaaattttcatgaaatgatgccaagttctattatttt |
290 |
Q |
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| T |
15155155 |
agttgaaaagttgtatccattggaataaatagaaattttcatgaaatggtgcaaacttttattatttt |
15155222 |
T |
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