View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2394_low_3 (Length: 312)
Name: NF2394_low_3
Description: NF2394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2394_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 90 - 297
Target Start/End: Original strand, 11177580 - 11177790
Alignment:
| Q |
90 |
atgttgaaaattatgaggatg---attataatgggaagaggagagtgaggaaccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaac |
186 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11177580 |
atgttgaaaattatgaggatgatgattataatgggaagaggagagtgaggaaccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaac |
11177679 |
T |
|
| Q |
187 |
atgtttgtaagaagggatgtttaacgtaggattggggttaaatgttgtattgttgttcttaatcttgagagcgagagaaatctctctttatcttgtagtt |
286 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11177680 |
atgtttgtaagaagggatgtttaacataggattggggttaaatgttgtattgttgttcttaatcttgagagcgagagaaatctctcttgatcttgtagtt |
11177779 |
T |
|
| Q |
287 |
gttgttttaat |
297 |
Q |
| |
|
||||||||||| |
|
|
| T |
11177780 |
gttgttttaat |
11177790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 11177446 - 11177534
Alignment:
| Q |
7 |
gaaacaacgcaagggttgtaaatatgaagatgaagataacaagggtgctataacattagcaactagtgatgaagataaggttaatgttg |
95 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
11177446 |
gaaacaacgcaagggtggtaaatatgaagatgaagataacaagggtgctataacattagctactagtggtgatgataaggttaatgttg |
11177534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 4703392 - 4703298
Alignment:
| Q |
107 |
gatgattataatgggaagaggagagtgaggaa-ccagtgaaagaaagatcattaaaatcgttaatgtgaaatgaagctaacatgtttgtaagaag |
200 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4703392 |
gatgatgataatgggaagaggagaatgaggaaacccgtgaaagaaaggtcactaaaatcgttaatgtgaaatgaagctaacatgtttctaagaag |
4703298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University