View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2394_low_9 (Length: 215)

Name: NF2394_low_9
Description: NF2394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2394_low_9
NF2394_low_9
[»] chr1 (1 HSPs)
chr1 (127-186)||(6012764-6012823)
[»] chr5 (1 HSPs)
chr5 (128-190)||(38498335-38498397)
[»] chr3 (2 HSPs)
chr3 (128-190)||(45648063-45648125)
chr3 (128-167)||(23227075-23227114)
[»] chr6 (1 HSPs)
chr6 (128-186)||(15963567-15963625)


Alignment Details
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 6012823 - 6012764
Alignment:
Q  127 cataggaaatatcccactacaatagaaagaatactatatatactatatatgaaggggata 186  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6012823 cataggaaatatcccactacaatagaaagaatattatatatactatatatgaaggggata 6012764  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 38498397 - 38498335
Alignment:
Q  128 ataggaaatatcccactacaatagaaagaatactatatatactatatatgaaggggatataga 190  Q
    ||||||||||||||||||||||||||| |||| |||  ||| |||||| |||||| |||||||    
T  38498397 ataggaaatatcccactacaatagaaacaatattatcaatattatatacgaagggaatataga 38498335  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 45648063 - 45648125
Alignment:
Q  128 ataggaaatatcccactacaatagaaagaatactatatatactatatatgaaggggatataga 190  Q
    |||| ||||||| ||||||||||| ||  ||| ||| ||||||||||||||||||||||||||    
T  45648063 atagaaaatatctcactacaataggaacgatattatttatactatatatgaaggggatataga 45648125  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 167
Target Start/End: Complemental strand, 23227114 - 23227075
Alignment:
Q  128 ataggaaatatcccactacaatagaaagaatactatatat 167  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  23227114 ataggaaatatcccactacaatagtaacaatactatatat 23227075  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 15963625 - 15963567
Alignment:
Q  128 ataggaaatatcccactacaatagaaagaatactatatatactatatatgaaggggata 186  Q
    |||||||||||| ||||||||||| || |||| |||  |||||||||||||||| ||||    
T  15963625 ataggaaatatctcactacaataggaacaatattatcaatactatatatgaaggagata 15963567  T

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