View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2395_low_1 (Length: 385)

Name: NF2395_low_1
Description: NF2395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2395_low_1
NF2395_low_1
[»] chr8 (44 HSPs)
chr8 (1-370)||(7010329-7010730)
chr8 (4-47)||(9963695-9963738)
chr8 (1-47)||(37392143-37392189)
chr8 (9-46)||(41406890-41406927)
chr8 (1-55)||(5502362-5502416)
chr8 (1-43)||(14710908-14710950)
chr8 (5-47)||(29107994-29108036)
chr8 (1-47)||(40413364-40413410)
chr8 (1-47)||(41934991-41935037)
chr8 (1-46)||(6243045-6243090)
chr8 (1-46)||(9047085-9047130)
chr8 (13-46)||(13884198-13884231)
chr8 (2-47)||(42689840-42689885)
chr8 (1-45)||(32020480-32020524)
chr8 (2-46)||(37471654-37471698)
chr8 (1-45)||(39211054-39211098)
chr8 (13-48)||(36064028-36064063)
chr8 (1-48)||(42569743-42569790)
chr8 (1-47)||(5491283-5491329)
chr8 (1-47)||(5740800-5740846)
chr8 (1-47)||(13924021-13924067)
chr8 (1-47)||(14233659-14233705)
chr8 (9-47)||(28772158-28772196)
chr8 (9-43)||(37942941-37942975)
chr8 (9-43)||(41675403-41675437)
chr8 (1-43)||(42768137-42768179)
chr8 (1-47)||(45081079-45081125)
chr8 (14-47)||(8410383-8410416)
chr8 (9-46)||(9079896-9079933)
chr8 (18-51)||(12339201-12339234)
chr8 (19-48)||(18549977-18550006)
chr8 (18-47)||(35792068-35792097)
chr8 (9-46)||(37568648-37568685)
chr8 (9-46)||(43873725-43873762)
chr8 (1-46)||(45081398-45081443)
chr8 (5-45)||(895935-895975)
chr8 (13-49)||(6161945-6161981)
chr8 (13-45)||(6806909-6806941)
chr8 (5-45)||(9630136-9630176)
chr8 (19-47)||(20996191-20996219)
chr8 (7-47)||(36874131-36874171)
chr8 (3-47)||(43419878-43419922)
chr8 (20-48)||(44068717-44068745)
chr8 (1-45)||(44607702-44607746)
[»] chr2 (52 HSPs)
chr2 (1-47)||(694279-694325)
chr2 (1-46)||(10216864-10216909)
chr2 (1-47)||(42607545-42607591)
chr2 (9-46)||(30416360-30416397)
chr2 (3-47)||(19695708-19695752)
chr2 (1-48)||(22353190-22353237)
chr2 (1-47)||(1095851-1095897)
chr2 (3-48)||(22296146-22296191)
chr2 (1-38)||(34215284-34215321)
chr2 (1-46)||(45202147-45202192)
chr2 (9-45)||(7502462-7502498)
chr2 (1-45)||(38777903-38777947)
chr2 (2-46)||(39233729-39233773)
chr2 (1-53)||(44058724-44058776)
chr2 (1-45)||(44105117-44105161)
chr2 (9-48)||(1573703-1573741)
chr2 (9-48)||(12358312-12358351)
chr2 (4-47)||(29795446-29795489)
chr2 (1-44)||(43076312-43076355)
chr2 (13-48)||(43820779-43820814)
chr2 (9-47)||(2013319-2013357)
chr2 (5-47)||(4263883-4263924)
chr2 (1-47)||(8482247-8482293)
chr2 (13-47)||(18373846-18373880)
chr2 (9-47)||(18531600-18531638)
chr2 (1-47)||(27329124-27329170)
chr2 (1-47)||(28013966-28014012)
chr2 (13-47)||(29168724-29168758)
chr2 (18-48)||(34913090-34913120)
chr2 (9-47)||(35171260-35171298)
chr2 (1-47)||(42081047-42081093)
chr2 (9-47)||(42821372-42821410)
chr2 (9-46)||(3771371-3771408)
chr2 (9-46)||(5095987-5096024)
chr2 (1-46)||(6511571-6511616)
chr2 (19-48)||(11152743-11152772)
chr2 (19-48)||(12256899-12256928)
chr2 (13-46)||(15123974-15124007)
chr2 (9-54)||(15283284-15283329)
chr2 (9-46)||(17917389-17917426)
chr2 (9-46)||(21313518-21313555)
chr2 (13-46)||(30415013-30415046)
chr2 (9-46)||(36587502-36587539)
chr2 (14-47)||(37601225-37601258)
chr2 (1-46)||(38600825-38600870)
chr2 (9-45)||(8555325-8555360)
chr2 (4-48)||(25086333-25086377)
chr2 (5-45)||(33583241-33583280)
chr2 (19-47)||(34141441-34141469)
chr2 (9-45)||(38246785-38246821)
chr2 (13-45)||(39285854-39285886)
chr2 (18-46)||(41868413-41868441)
[»] chr3 (48 HSPs)
chr3 (1-48)||(50146486-50146533)
chr3 (5-45)||(43883314-43883354)
chr3 (1-48)||(47683799-47683846)
chr3 (4-47)||(52564663-52564706)
chr3 (1-47)||(1765403-1765449)
chr3 (9-47)||(39901590-39901628)
chr3 (1-47)||(46952948-46952994)
chr3 (1-47)||(50745559-50745605)
chr3 (1-46)||(9719467-9719512)
chr3 (1-46)||(9753230-9753275)
chr3 (8-48)||(8868870-8868910)
chr3 (1-45)||(35554130-35554174)
chr3 (1-45)||(53871047-53871091)
chr3 (3-47)||(55361250-55361294)
chr3 (5-48)||(11056941-11056984)
chr3 (13-48)||(19150357-19150392)
chr3 (16-47)||(27198201-27198232)
chr3 (13-48)||(36869875-36869910)
chr3 (5-48)||(50876381-50876424)
chr3 (13-47)||(7252-7286)
chr3 (1-47)||(28700471-28700517)
chr3 (9-43)||(29373924-29373958)
chr3 (1-47)||(29846906-29846952)
chr3 (13-47)||(31143269-31143303)
chr3 (9-51)||(34607954-34607996)
chr3 (13-43)||(35299911-35299941)
chr3 (9-47)||(35376585-35376623)
chr3 (1-47)||(36318297-36318343)
chr3 (13-47)||(38359344-38359378)
chr3 (9-47)||(39350606-39350644)
chr3 (1-47)||(43169768-43169814)
chr3 (5-47)||(44937218-44937260)
chr3 (1-46)||(47484290-47484336)
chr3 (1-47)||(49361850-49361896)
chr3 (9-47)||(53932425-53932463)
chr3 (13-46)||(275226-275259)
chr3 (5-46)||(9753167-9753208)
chr3 (5-46)||(23868997-23869038)
chr3 (1-46)||(29057659-29057704)
chr3 (9-46)||(32622397-32622434)
chr3 (1-46)||(45205288-45205333)
chr3 (1-46)||(48893354-48893399)
chr3 (1-45)||(51487760-51487802)
chr3 (8-48)||(11075399-11075439)
chr3 (20-48)||(27646496-27646524)
chr3 (13-45)||(31206889-31206921)
chr3 (9-45)||(40419676-40419712)
chr3 (18-46)||(42102236-42102264)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-47)||(31615-31661)
[»] chr5 (30 HSPs)
chr5 (1-47)||(4434481-4434527)
chr5 (1-47)||(14206399-14206445)
chr5 (9-55)||(27005513-27005559)
chr5 (9-46)||(8681843-8681880)
chr5 (13-46)||(17063865-17063898)
chr5 (1-38)||(42211538-42211575)
chr5 (1-45)||(33910103-33910147)
chr5 (9-45)||(34400619-34400655)
chr5 (1-48)||(6865802-6865849)
chr5 (1-44)||(34080316-34080359)
chr5 (1-48)||(39458666-39458713)
chr5 (1-47)||(372735-372781)
chr5 (13-47)||(11148510-11148544)
chr5 (1-47)||(12203157-12203203)
chr5 (1-47)||(13734375-13734421)
chr5 (1-47)||(32732133-32732179)
chr5 (13-47)||(35075614-35075648)
chr5 (9-47)||(38500942-38500980)
chr5 (13-46)||(2629818-2629851)
chr5 (1-46)||(8442170-8442215)
chr5 (9-46)||(19983841-19983878)
chr5 (13-46)||(27440479-27440512)
chr5 (9-46)||(28501592-28501629)
chr5 (5-46)||(30334785-30334826)
chr5 (13-46)||(41460116-41460149)
chr5 (1-41)||(7080546-7080586)
chr5 (7-47)||(7927354-7927394)
chr5 (13-53)||(11881025-11881065)
chr5 (13-53)||(13089820-13089860)
chr5 (19-47)||(34693260-34693288)
[»] chr1 (46 HSPs)
chr1 (1-47)||(50797790-50797836)
chr1 (1-46)||(37690429-37690474)
chr1 (1-46)||(47398466-47398511)
chr1 (1-46)||(48872043-48872088)
chr1 (1-48)||(4857920-4857967)
chr1 (9-47)||(17526418-17526456)
chr1 (9-47)||(26159440-26159478)
chr1 (9-47)||(30535990-30536028)
chr1 (1-47)||(40596069-40596115)
chr1 (1-47)||(43612095-43612141)
chr1 (1-47)||(44517976-44518022)
chr1 (1-47)||(45272175-45272221)
chr1 (1-47)||(48325793-48325839)
chr1 (9-47)||(48678987-48679025)
chr1 (1-46)||(16836130-16836175)
chr1 (1-46)||(40139126-40139171)
chr1 (13-46)||(40238438-40238471)
chr1 (1-46)||(41507209-41507254)
chr1 (1-45)||(50882124-50882168)
chr1 (1-45)||(51571416-51571460)
chr1 (9-48)||(34941954-34941993)
chr1 (9-48)||(39669804-39669843)
chr1 (1-47)||(611650-611696)
chr1 (9-47)||(11812386-11812424)
chr1 (1-47)||(14983783-14983829)
chr1 (9-47)||(23554750-23554788)
chr1 (1-47)||(27687534-27687580)
chr1 (1-46)||(30196724-30196770)
chr1 (13-47)||(35883645-35883679)
chr1 (1-47)||(42539417-42539463)
chr1 (13-47)||(44672068-44672102)
chr1 (1-47)||(49453490-49453536)
chr1 (7-48)||(2206234-2206275)
chr1 (1-46)||(18336158-18336203)
chr1 (9-46)||(29254100-29254137)
chr1 (3-48)||(35335520-35335565)
chr1 (9-46)||(42615860-42615897)
chr1 (15-48)||(43641023-43641056)
chr1 (9-46)||(45863755-45863792)
chr1 (13-46)||(49931553-49931586)
chr1 (9-45)||(1922459-1922495)
chr1 (20-48)||(27563482-27563510)
chr1 (2-46)||(29716236-29716280)
chr1 (11-47)||(39788763-39788799)
chr1 (13-45)||(51037978-51038010)
chr1 (13-45)||(52714979-52715011)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-46)||(18662-18707)
[»] chr6 (29 HSPs)
chr6 (1-46)||(2163702-2163747)
chr6 (1-46)||(2175335-2175380)
chr6 (3-47)||(1196057-1196101)
chr6 (3-47)||(3180020-3180064)
chr6 (9-47)||(2242056-2242094)
chr6 (9-46)||(6256435-6256472)
chr6 (1-46)||(32644623-32644668)
chr6 (3-43)||(31413539-31413579)
chr6 (1-48)||(6110528-6110574)
chr6 (4-46)||(1286923-1286965)
chr6 (13-47)||(8505812-8505846)
chr6 (9-47)||(11785354-11785392)
chr6 (13-47)||(15722541-15722575)
chr6 (9-47)||(16337104-16337142)
chr6 (9-47)||(17417269-17417307)
chr6 (14-48)||(30714678-30714712)
chr6 (1-47)||(31517195-31517241)
chr6 (13-46)||(11635573-11635606)
chr6 (9-46)||(12500061-12500098)
chr6 (9-46)||(12507390-12507427)
chr6 (9-46)||(12508803-12508840)
chr6 (6-47)||(30945822-30945863)
chr6 (5-46)||(32135450-32135491)
chr6 (19-48)||(34792020-34792049)
chr6 (9-45)||(1246393-1246429)
chr6 (20-48)||(7636473-7636501)
chr6 (9-45)||(12501475-12501511)
chr6 (1-45)||(16352175-16352219)
chr6 (10-46)||(21857602-21857638)
[»] chr4 (63 HSPs)
chr4 (6-46)||(12387685-12387725)
chr4 (13-48)||(15638159-15638194)
chr4 (1-47)||(42490919-42490965)
chr4 (1-38)||(1627573-1627610)
chr4 (9-46)||(2738302-2738339)
chr4 (1-46)||(32365682-32365727)
chr4 (9-54)||(56474798-56474843)
chr4 (1-45)||(5386385-5386429)
chr4 (3-47)||(18568463-18568507)
chr4 (16-48)||(31559536-31559568)
chr4 (5-48)||(2109441-2109484)
chr4 (9-48)||(12074185-12074224)
chr4 (1-48)||(26718378-26718425)
chr4 (1-48)||(26731006-26731053)
chr4 (1-47)||(37727069-37727116)
chr4 (1-48)||(41347482-41347528)
chr4 (13-48)||(42915257-42915292)
chr4 (1-48)||(50980600-50980647)
chr4 (1-47)||(4106053-4106098)
chr4 (1-47)||(4511824-4511870)
chr4 (1-47)||(5234486-5234532)
chr4 (13-47)||(9162065-9162099)
chr4 (9-47)||(22893868-22893906)
chr4 (9-47)||(22945536-22945574)
chr4 (9-47)||(24235319-24235357)
chr4 (1-47)||(27384186-27384232)
chr4 (9-47)||(35661631-35661669)
chr4 (9-47)||(36728656-36728694)
chr4 (9-47)||(39158104-39158142)
chr4 (2-48)||(41119497-41119543)
chr4 (5-47)||(41262648-41262690)
chr4 (9-47)||(43168748-43168786)
chr4 (1-47)||(45678273-45678319)
chr4 (1-47)||(54036544-54036590)
chr4 (1-46)||(1580298-1580342)
chr4 (1-46)||(4974111-4974156)
chr4 (9-46)||(9776366-9776403)
chr4 (13-46)||(14443198-14443231)
chr4 (9-46)||(19678617-19678654)
chr4 (13-46)||(23220335-23220368)
chr4 (1-46)||(24310536-24310581)
chr4 (1-46)||(28899230-28899275)
chr4 (9-46)||(29384231-29384268)
chr4 (3-48)||(32621636-32621681)
chr4 (1-46)||(37731926-37731971)
chr4 (1-46)||(39241316-39241361)
chr4 (5-46)||(39684636-39684677)
chr4 (9-46)||(40335789-40335826)
chr4 (9-46)||(42178084-42178121)
chr4 (2-47)||(46173549-46173594)
chr4 (19-48)||(51107485-51107514)
chr4 (9-46)||(55996422-55996459)
chr4 (1-45)||(9095949-9095993)
chr4 (12-48)||(10994189-10994225)
chr4 (9-53)||(14113649-14113693)
chr4 (13-45)||(21014055-21014087)
chr4 (4-48)||(22007831-22007875)
chr4 (4-48)||(26440674-26440718)
chr4 (5-45)||(28676171-28676211)
chr4 (16-48)||(33860582-33860614)
chr4 (19-47)||(50291281-50291309)
chr4 (2-46)||(54622631-54622675)
chr4 (20-48)||(54801532-54801560)
[»] scaffold0154 (1 HSPs)
scaffold0154 (9-48)||(9882-9921)
[»] scaffold0432 (1 HSPs)
scaffold0432 (13-55)||(6558-6600)
[»] chr7 (36 HSPs)
chr7 (3-45)||(38218368-38218410)
chr7 (1-47)||(41985115-41985161)
chr7 (9-46)||(6353725-6353762)
chr7 (1-46)||(33465054-33465099)
chr7 (1-46)||(37848635-37848680)
chr7 (13-52)||(27164875-27164914)
chr7 (1-48)||(45420075-45420122)
chr7 (13-48)||(46148164-46148199)
chr7 (12-47)||(47905153-47905188)
chr7 (1-48)||(49142532-49142579)
chr7 (1-47)||(2323303-2323349)
chr7 (1-47)||(2469702-2469748)
chr7 (1-47)||(22330646-22330692)
chr7 (5-47)||(23848088-23848130)
chr7 (9-47)||(32919014-32919052)
chr7 (9-47)||(35005131-35005169)
chr7 (1-47)||(37352005-37352051)
chr7 (9-47)||(37352109-37352147)
chr7 (13-47)||(37392042-37392076)
chr7 (13-55)||(40693566-40693608)
chr7 (9-47)||(42552898-42552936)
chr7 (1-47)||(43213318-43213364)
chr7 (13-47)||(44187690-44187724)
chr7 (2-43)||(472947-472988)
chr7 (9-46)||(1284414-1284451)
chr7 (9-46)||(3247069-3247106)
chr7 (9-42)||(6699869-6699902)
chr7 (1-46)||(8459614-8459659)
chr7 (9-46)||(34978296-34978333)
chr7 (13-46)||(41080126-41080159)
chr7 (1-46)||(43444635-43444680)
chr7 (13-45)||(17909088-17909120)
chr7 (3-47)||(19510374-19510418)
chr7 (13-45)||(23910289-23910321)
chr7 (1-45)||(38547305-38547349)
chr7 (5-45)||(49025333-49025373)
[»] scaffold1625 (1 HSPs)
scaffold1625 (13-47)||(819-853)
[»] scaffold0449 (1 HSPs)
scaffold0449 (9-43)||(7851-7885)
[»] scaffold0201 (1 HSPs)
scaffold0201 (9-46)||(8472-8509)
[»] scaffold0009 (1 HSPs)
scaffold0009 (9-48)||(49386-49426)
[»] scaffold0001 (1 HSPs)
scaffold0001 (9-45)||(404749-404785)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 7010730 - 7010329
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctctacttaaaagagcattaagatgtgaaaaga----------------tgcaagnn 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||                ||||||      
T  7010730 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta-ttaaaagagcactaagatgtgaaaagacagtaaaatgaaaagatgcaagta 7010632  T
Q  85 nnnnnnctttctaacattcattagatgccaccaatgtaatcaatggaattttaggaatcatcaccaaaaa-ggaaaggcagaatccccttcacacacaat 183  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7010631 ttttttctttctaacattcattagatgccaccaatgtaatcaatggaattttaggaatcatcaccaaaaaaggaaaggcagaatccccttcacacacaat 7010532  T
Q  184 gatacctcctatacggcagccaacacagccagaagtagtcattagccagaagtaattctaaaaaatacaaaattacaattgctctatcctaatccatcac 283  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7010531 gatacctcctatacggcagccaacacagccagaagtagtcatcagccagaagtaattctaaaaaatacaaaattacaattgctctatcctaatccatcac 7010432  T
Q  284 aaaataccagttacattctttttctttcc----------------aaaagtatatatcactttattagattactattatgcctttaatcatctccagctt 367  Q
    |||||||||||||||||||||||||||||                ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7010431 aaaataccagttacattctttttctttccaaaacatataaattccaaaagtatatatcactttattagattattattatgcctttaatcatctccagctt 7010332  T
Q  368 tgt 370  Q
    |||    
T  7010331 tgt 7010329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 9963738 - 9963695
Alignment:
Q  4 gagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  9963738 gagagaaaattgtcaaaaaattattgtacaaatatcatttctct 9963695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37392143 - 37392189
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  37392143 tgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 37392189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 41406890 - 41406927
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41406890 aaaattgtcaaaaaatgattgtacaaatatcatttctc 41406927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5502416 - 5502362
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctctacttaaaa 55  Q
    ||||||||||| |||||| ||| || |||||||||||||||||||||||| ||||    
T  5502416 tgagagagaaagttgtcacaaagtggttgtacaaatatcatttctctactcaaaa 5502362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14710908 - 14710950
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcattt 43  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  14710908 tgagagagaaagttgtcacaaaatgattgtacaaatatcattt 14710950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 29108036 - 29107994
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  29108036 agagaaagttgttaaaaaatgattgtacaaatatcatttctct 29107994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40413364 - 40413410
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  40413364 tgagagagaaagttgtcacaaaataattgtacaaatatcatttctct 40413410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41935037 - 41934991
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||    
T  41935037 tgagagagaaaattgtcacaaaatggttgtacaaataccatttctct 41934991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6243090 - 6243045
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||    
T  6243090 tgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 6243045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9047085 - 9047130
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||||||||| || ||||||||||||||||||||    
T  9047085 tgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctc 9047130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 13884198 - 13884231
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||||||||||||||||||||||||    
T  13884198 ttgtcaaaaaatgattgtacaaatatcatttctc 13884231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 42689885 - 42689840
Alignment:
Q  2 gagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||| |||| |||||| |||||||||||||||||||||    
T  42689885 gagagagaaaatcgtcataaaatggttgtacaaatatcatttctct 42689840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32020480 - 32020524
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||| || |||||||||| |||||||||||||||||||    
T  32020480 tgagagagaaagttatcaaaaaatggttgtacaaatatcatttct 32020524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 37471698 - 37471654
Alignment:
Q  2 gagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||    
T  37471698 gagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 37471654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39211098 - 39211054
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||||    
T  39211098 tgagagagaaagttgtcaaaaaatggttgttcaaatatcatttct 39211054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 36064063 - 36064028
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||| |||||||||||||||||||||||||||||    
T  36064063 ttgtcacaaaatgattgtacaaatatcatttctcta 36064028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42569743 - 42569790
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||| |||||| ||||||| ||| |||||||||||||||||    
T  42569743 tgagagagaaagttgtcataaaatgaatgttcaaatatcatttctcta 42569790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5491329 - 5491283
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||| |||||||||||| ||||||||||||| ||||||||    
T  5491329 tgagagataaagttgtcaaaaaattattgtacaaatataatttctct 5491283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5740800 - 5740846
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||| |||||||||| || |||||||||||||||||||||    
T  5740800 tgagagaaaaagttgtcaaaaagtggttgtacaaatatcatttctct 5740846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13924067 - 13924021
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| ||||  ||||||| |||||||||||||||||||||    
T  13924067 tgagagagaaagttgtacaaaaatggttgtacaaatatcatttctct 13924021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14233659 - 14233705
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||| |||||||  |||||||||||||||||||||    
T  14233659 tgagagagaaagttgtaaaaaaatagttgtacaaatatcatttctct 14233705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 28772158 - 28772196
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  28772158 aaaattgtcaaaaaatggttgttcaaatatcatttctct 28772196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 37942941 - 37942975
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcattt 43  Q
    |||||||||||||||| ||||||||||||||||||    
T  37942941 aaaattgtcaaaaaataattgtacaaatatcattt 37942975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 41675403 - 41675437
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  41675403 aaaattatcaaaaaatgattgtacaaatatcattt 41675437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42768137 - 42768179
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcattt 43  Q
    |||||||||||||||||||||| |  |||||||||||||||||    
T  42768137 tgagagagaaaattgtcaaaaagtagttgtacaaatatcattt 42768179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45081125 - 45081079
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||| |||| |||||||||||||| |||||| |||||||||||||    
T  45081125 tgagagggaaagttgtcaaaaaatgaatgtacatatatcatttctct 45081079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 8410383 - 8410416
Alignment:
Q  14 tgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||| ||||||||||||||||||||||||||||    
T  8410383 tgtcataaaatgattgtacaaatatcatttctct 8410416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 9079896 - 9079933
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  9079896 aaaattgtcataaaatgatcgtacaaatatcatttctc 9079933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 12339201 - 12339234
Alignment:
Q  18 aaaaaatgattgtacaaatatcatttctctactt 51  Q
    |||||||||||||||||||||| |||||||||||    
T  12339201 aaaaaatgattgtacaaatatcgtttctctactt 12339234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 18550006 - 18549977
Alignment:
Q  19 aaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||||||||||||||||||||||    
T  18550006 aaaaatgattgtacaaatatcatttctcta 18549977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 35792097 - 35792068
Alignment:
Q  18 aaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||||||||||||||||||    
T  35792097 aaaaaatgattgtacaaatatcatttctct 35792068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 37568648 - 37568685
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  37568648 aaaattgtcacaaaatgtttgtacaaatatcatttctc 37568685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 43873725 - 43873762
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  43873725 aaaattgtcacaaaatggttgtacaaatatcatttctc 43873762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45081443 - 45081398
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||| |||||||| ||||| || ||||||||||||||||||||    
T  45081443 tgagagacaaaattgttaaaaattggttgtacaaatatcatttctc 45081398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 895975 - 895935
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||| |||||||||| || |||||||||||||||||||    
T  895975 agagaaagttgtcaaaaagtggttgtacaaatatcatttct 895935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 6161981 - 6161945
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctctac 49  Q
    |||||| |||||| |||||||||||||||||||||||    
T  6161981 ttgtcataaaatggttgtacaaatatcatttctctac 6161945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 6806941 - 6806909
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||| ||||||||||||||||||||||||||    
T  6806941 ttgtcacaaaatgattgtacaaatatcatttct 6806909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 9630176 - 9630136
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||| |||| ||||||||||||| ||||||||||||||    
T  9630176 agagaaagttgttaaaaaatgattgttcaaatatcatttct 9630136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 20996191 - 20996219
Alignment:
Q  19 aaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||||||||||||||    
T  20996191 aaaaatgattgtacaaatatcatttctct 20996219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 36874131 - 36874171
Alignment:
Q  7 agaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  36874131 agaaaattgtcaaaaaattgttgttcaaatatcatttctct 36874171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 43419922 - 43419878
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||| ||| |  |||||||||||||||||||||    
T  43419922 agagagaaaattgtcacaaattagttgtacaaatatcatttctct 43419878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 44068745 - 44068717
Alignment:
Q  20 aaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||||||||||||||||    
T  44068745 aaaatgattgtacaaatatcatttctcta 44068717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44607746 - 44607702
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||| ||||||  ||||| |||||||||||||||||||    
T  44607746 tgagagagaaagttgtcaccaaatggttgtacaaatatcatttct 44607702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 52)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 694325 - 694279
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  694325 tgagagagaaaattgtcaaaaaatggttgtacaaatatcatttctct 694279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10216909 - 10216864
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  10216909 tgagagagaaaattgtcaaaaagtgattgtacaaatatcatttctc 10216864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42607545 - 42607591
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  42607545 tgagagagaaaattgtcacaaaataattgtacaaatatcatttctct 42607591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 30416397 - 30416360
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30416397 aaaattgtcaaaaaatgattgtacaaatatcatttctc 30416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 19695708 - 19695752
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  19695708 agagagaaagttgtcaaaaagtgattgtacaaatatcatttctct 19695752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22353190 - 22353237
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  22353190 tgagaaagaaagttgtcacaaaatgattgtacaaatatcatttctcta 22353237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1095851 - 1095897
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||    
T  1095851 tgagagagaaaattgtcataaaatggatgtacaaatatcatttctct 1095897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 22296146 - 22296191
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||    
T  22296146 agagagaaaattgtacaaaaatggttgtacaaatatcatttctcta 22296191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34215321 - 34215284
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatat 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  34215321 tgagagagaaaattgtcaaaaaataattgtacaaatat 34215284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45202147 - 45202192
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||    
T  45202147 tgagagagaaagttgtaaaaaaatggttgtacaaatatcatttctc 45202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 7502462 - 7502498
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7502462 aaaattgtcaaaaaatggttgtacaaatatcatttct 7502498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38777947 - 38777903
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||    
T  38777947 tgagagagaaaattgtataaaaatgattgtacaaatatcctttct 38777903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 39233729 - 39233773
Alignment:
Q  2 gagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||    
T  39233729 gagagataaagttgtcaaaaaatgattgtaaaaatatcatttctc 39233773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 44058776 - 44058724
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctctacttaa 53  Q
    ||||||||||  || | ||||||||||||||||||||||||||||||| ||||    
T  44058776 tgagagagaacgttattaaaaaatgattgtacaaatatcatttctctaattaa 44058724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44105117 - 44105161
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||    
T  44105117 tgagagagaaaattgtcacaaaatgattgtataaatataatttct 44105161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 1573741 - 1573703
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  1573741 aaaattgtcaaaaaa-gattgtacaaatatcatttctcta 1573703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 12358351 - 12358312
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  12358351 aaaattgtcacaaaatgattgtacatatatcatttctcta 12358312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 29795489 - 29795446
Alignment:
Q  4 gagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||| |||||| |||||| |||||||||||||||||||||    
T  29795489 gagagaaagttgtcacaaaatggttgtacaaatatcatttctct 29795446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 43076355 - 43076312
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttc 44  Q
    ||||||||||||||||  |||||||||| |||||||||||||||    
T  43076355 tgagagagaaaattgtacaaaaatgattatacaaatatcatttc 43076312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 43820779 - 43820814
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||| |||||||||||||||||||||||||||||||    
T  43820779 ttgtaaaaaaatgattgtacaaatatcatttctcta 43820814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 2013319 - 2013357
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  2013319 aaaattgtcataaaatgaatgtacaaatatcatttctct 2013357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 4263883 - 4263924
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||||||||||||| |||||||||||||||||||||    
T  4263883 agagaaagttgtcaaaaaatg-ttgtacaaatatcatttctct 4263924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8482247 - 8482293
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| ||| || |||||||||||||||||||||    
T  8482247 tgagagagaaagttgtcataaagtggttgtacaaatatcatttctct 8482293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 18373880 - 18373846
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  18373880 ttgtcataaaatgattgtacaaatatcatttctct 18373846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 18531638 - 18531600
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  18531638 aaaattgtcaaaaaatagttgtacaaatatcatttctct 18531600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27329124 - 27329170
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| ||||   ||||||||||||||||||||||||||||    
T  27329124 tgagagagaaagttgtaccaaaatgattgtacaaatatcatttctct 27329170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28014012 - 28013966
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||||||| || |||||||||||| ||||||||    
T  28014012 tgagagagaaagttgtcaaaaattggttgtacaaatataatttctct 28013966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 29168758 - 29168724
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||| |||||||||||||||||||||    
T  29168758 ttgtcaaaaaatggttgtacaaatatcatttctct 29168724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 34913120 - 34913090
Alignment:
Q  18 aaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||||||||||||||||||    
T  34913120 aaaaaatgattgtacaaatatcatttctcta 34913090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 35171260 - 35171298
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  35171260 aaaattgtcacaaaatggttgtacaaatatcatttctct 35171298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42081093 - 42081047
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||||||| ||  ||||||||||||||||||||    
T  42081093 tgagagagaaagttgtcaaaaagtggctgtacaaatatcatttctct 42081047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 42821410 - 42821372
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  42821410 aaaattgtcgaaaaatgattgtacaaatataatttctct 42821372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 3771408 - 3771371
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| | |||||||||||||||||||||||||||||    
T  3771408 aaaattattaaaaaatgattgtacaaatatcatttctc 3771371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 5095987 - 5096024
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  5095987 aaaattatcacaaaatgattgtacaaatatcatttctc 5096024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6511571 - 6511616
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||| ||||||  ||| |||||||||||||||    
T  6511571 tgagagagaaaattgtcacaaaatggatgtccaaatatcatttctc 6511616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 11152743 - 11152772
Alignment:
Q  19 aaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||||||||||||||||||||||    
T  11152743 aaaaatgattgtacaaatatcatttctcta 11152772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 12256928 - 12256899
Alignment:
Q  19 aaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||||||||||||||||||||||    
T  12256928 aaaaatgattgtacaaatatcatttctcta 12256899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 15123974 - 15124007
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||| ||||||||||||||||||||    
T  15123974 ttgtcaaaaaatggttgtacaaatatcatttctc 15124007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 15283284 - 15283329
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctctacttaaa 54  Q
    |||||||||| ||| || ||||||||||||||||||||| ||||||    
T  15283284 aaaattgtcacaaagtggttgtacaaatatcatttctcttcttaaa 15283329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 17917426 - 17917389
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  17917426 aaaattgttaaaaaataattgtacaaatatcatttctc 17917389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 21313518 - 21313555
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  21313518 aaaattatcaaagaatgattgtacaaatatcatttctc 21313555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 30415046 - 30415013
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||| |||||||||||||||||||||    
T  30415046 ttgtcaaaaaataattgtacaaatatcatttctc 30415013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 36587502 - 36587539
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  36587502 aaaattgtcaaaaaatggttgttcaaatatcatttctc 36587539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 37601258 - 37601225
Alignment:
Q  14 tgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||| ||||||||||||||||||||||||||||    
T  37601258 tgtcataaaatgattgtacaaatatcatttctct 37601225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38600870 - 38600825
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||||||||||||  |||||| ||||||||||||    
T  38600870 tgagagagaaagttgtcaaaaaatggatgtacatatatcatttctc 38600825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 8555325 - 8555360
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||||||| |||||||||||||||||||||    
T  8555325 aaaattgtcaaaaaa-gattgtacaaatatcatttct 8555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 25086377 - 25086333
Alignment:
Q  4 gagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||| |||||| |||||  ||||||||||||||||||||||    
T  25086377 gagagaaagttgtcataaaattgttgtacaaatatcatttctcta 25086333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 33583241 - 33583280
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  33583241 agagaaaattgtcaaaaa-tgattatacaaatatcatttct 33583280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 34141469 - 34141441
Alignment:
Q  19 aaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||||||||||||||    
T  34141469 aaaaatgattgtacaaatatcatttctct 34141441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 38246785 - 38246821
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  38246785 aaaattgtcacaaattgattgtacaaatatcatttct 38246821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 39285886 - 39285854
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||| ||||||||||||||||||||||    
T  39285886 ttgtcaaaaagtgattgtacaaatatcatttct 39285854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 41868413 - 41868441
Alignment:
Q  18 aaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||||||||||||||    
T  41868413 aaaaaatgattgtacaaatatcatttctc 41868441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50146533 - 50146486
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  50146533 tgagagagaaaattgtcacaaaatgattatacaaatatcatttctcta 50146486  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 43883354 - 43883314
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  43883354 agagaaaattgtcaaaaaatggttgtacaaatatcatttct 43883314  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 47683846 - 47683799
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||||    
T  47683846 tgagagagaaagttgtcacaaaatggttgtacaaatatcatttctcta 47683799  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 52564663 - 52564706
Alignment:
Q  4 gagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||| |||||| |||||||||||||||||||||    
T  52564663 gagagaaaattgtcacaaaatggttgtacaaatatcatttctct 52564706  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1765449 - 1765403
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||    
T  1765449 tgagagagaaagttgtcacaaaatgaatgtacaaatatcatttctct 1765403  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 39901628 - 39901590
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  39901628 aaaattatcaaaaaatgattgtacaaatatcatttctct 39901590  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46952994 - 46952948
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| || |||||||||| |||||||||||||||||||||    
T  46952994 tgagagagaaagttatcaaaaaatggttgtacaaatatcatttctct 46952948  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 50745605 - 50745559
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||||    
T  50745605 tgagagagaaagttgtacaaaaatgattgtacaaatatcatttctct 50745559  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9719467 - 9719512
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||    
T  9719467 tgagagggaaaattgtcaaaaagtggttgtacaaatatcatttctc 9719512  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9753275 - 9753230
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||    
T  9753275 tgagagataaaattgtcacaaaatgattgttcaaatatcatttctc 9753230  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 8868910 - 8868870
Alignment:
Q  8 gaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  8868910 gaaagttgtcaaaaaaagattgtacaaatatcatttctcta 8868870  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35554130 - 35554174
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||| |||||||||| ||||| ||||||||||||||||    
T  35554130 tgagagagaaagttgtcaaaaagtgattatacaaatatcatttct 35554174  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 53871047 - 53871091
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||||||||||| |||||| |||| ||||||||||||||    
T  53871047 tgagagagaaaattgtcataaaatggttgttcaaatatcatttct 53871091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 55361250 - 55361294
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||    
T  55361250 agagagaaagttgtcaagaaatggttgtacaaatatcatttctct 55361294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 11056941 - 11056984
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||    
T  11056941 agagaaagttgtcaaaaaattgttgtacaaatatcatttctcta 11056984  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 19150357 - 19150392
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||| |||||||||||||||||||||||||||||||    
T  19150357 ttgttaaaaaatgattgtacaaatatcatttctcta 19150392  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 27198201 - 27198232
Alignment:
Q  16 tcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||||||||||||||||||||    
T  27198201 tcaaaaaatgattgtacaaatatcatttctct 27198232  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 36869875 - 36869910
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||||| ||||||||||||||||||||||    
T  36869875 ttgtcaaaaaatggttgtacaaatatcatttctcta 36869910  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 50876381 - 50876424
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||    
T  50876381 agagaaagttgtcaaaaaattgttgtacaaatatcatttctcta 50876424  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 7252 - 7286
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  7252 ttgtcagaaaatgattgtacaaatatcatttctct 7286  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28700517 - 28700471
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||| ||||||||||||| |||| ||||||||||||||||    
T  28700517 tgagagataaagttgtcaaaaaatggttgttcaaatatcatttctct 28700471  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 29373958 - 29373924
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcattt 43  Q
    |||||||||| ||||||||||||||||||||||||    
T  29373958 aaaattgtcataaaatgattgtacaaatatcattt 29373924  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29846906 - 29846952
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| ||||  ||||||| |||||||||||||||||||||    
T  29846906 tgagagagaaagttgtacaaaaatggttgtacaaatatcatttctct 29846952  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 31143303 - 31143269
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||||||||||||| ||||||    
T  31143303 ttgtcaaaaaatgattgtacaaatatcacttctct 31143269  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 34607954 - 34607996
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctctactt 51  Q
    |||||||||| ||| || |||||||||||||||||||||||||    
T  34607954 aaaattgtcacaaagtggttgtacaaatatcatttctctactt 34607996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 35299911 - 35299941
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcattt 43  Q
    |||||||||||||||||||||||||||||||    
T  35299911 ttgtcaaaaaatgattgtacaaatatcattt 35299941  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 35376585 - 35376623
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  35376585 aaaattgtcacaaaatggttgtacaaatatcatttctct 35376623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36318297 - 36318343
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||||||| ||  | ||||||||||||||||||    
T  36318297 tgagagagaaaattgtcaaaaagtggatatacaaatatcatttctct 36318343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 38359344 - 38359378
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||| ||||||||||||||||||||||||||||||    
T  38359344 ttgttaaaaaatgattgtacaaatatcatttctct 38359378  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 39350606 - 39350644
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  39350606 aaaattgttaaaaaataattgtacaaatatcatttctct 39350644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43169768 - 43169814
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||| |||||| |||||| |||||||||||||||||||||    
T  43169768 tgagagaaaaagttgtcacaaaatggttgtacaaatatcatttctct 43169814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 44937260 - 44937218
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||||||||||||  |||||||||||||||||||||    
T  44937260 agagaaagttgtcaaaaaattgttgtacaaatatcatttctct 44937218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 47484336 - 47484290
Alignment:
Q  1 tgagagagaaaattgt-caaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||||||    
T  47484336 tgagagaaaaaattgtacaaaaaatggttgtacaaatatcatttctc 47484290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 49361850 - 49361896
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||| ||||  |||||||||||||||||||||||||||||    
T  49361850 tgagagaaaaagttgtacaaaaatgattgtacaaatatcatttctct 49361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 53932425 - 53932463
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  53932425 aaaattgtcacaaaatggttgtacaaatatcatttctct 53932463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 275259 - 275226
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||| ||||||||||||||||||||||||||    
T  275259 ttgtcaataaatgattgtacaaatatcatttctc 275226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 9753208 - 9753167
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||| ||||||||| || |||||||||||||||||||||    
T  9753208 agagaaagttgtcaaaatataattgtacaaatatcatttctc 9753167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 23868997 - 23869038
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||| | |||||| ||||||||||||||||||||    
T  23868997 agagaaaattgttataaaatggttgtacaaatatcatttctc 23869038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29057704 - 29057659
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| ||||  ||||||| ||||||||||||||||||||    
T  29057704 tgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 29057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 32622397 - 32622434
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  32622397 aaaattatcaaaaaatgattgtataaatatcatttctc 32622434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45205333 - 45205288
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||| |||||||||| |||||  ||||||||||||||||||||    
T  45205333 tgagagaaaaaattgtcacaaaatagttgtacaaatatcatttctc 45205288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 48893399 - 48893354
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||| |||||||||||||||||| |||  ||||||||||||||    
T  48893399 tgagagaaaaaattgtcaaaaaatgaatgtttaaatatcatttctc 48893354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51487802 - 51487760
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||||||||||||||||   ||||||||||||||||||    
T  51487802 tgagagagaaaattgtcaaaaaat--atgtacaaatatcatttct 51487760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 11075399 - 11075439
Alignment:
Q  8 gaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
T  11075399 gaaaattgtcaaacaattgttgtacaaatatcatttctcta 11075439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 27646524 - 27646496
Alignment:
Q  20 aaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||||||||||||||||    
T  27646524 aaaatgattgtacaaatatcatttctcta 27646496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 31206889 - 31206921
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||| ||||||||||||||||||||||||||    
T  31206889 ttgtcacaaaatgattgtacaaatatcatttct 31206921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 40419676 - 40419712
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  40419676 aaaattatcacaaaatgattgtacaaatatcatttct 40419712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 42102264 - 42102236
Alignment:
Q  18 aaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||||||||||||||    
T  42102264 aaaaaatgattgtacaaatatcatttctc 42102236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31615 - 31661
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  31615 tgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 31661  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4434527 - 4434481
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||    
T  4434527 tgagagaaaaaattgtcaaaaaatggttgtacaaatatcatttctct 4434481  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14206445 - 14206399
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  14206445 tgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 14206399  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 27005513 - 27005559
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctctacttaaaa 55  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||    
T  27005513 aaaattatcaaaaaataattgtacaaatatcatttctctacataaaa 27005559  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 8681880 - 8681843
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| |||||||||||||||||||||||||||||||    
T  8681880 aaaattatcaaaaaatgattgtacaaatatcatttctc 8681843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 17063898 - 17063865
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||||||||||||||||||||||||    
T  17063898 ttgtcaaaaaatgattgtacaaatatcatttctc 17063865  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42211575 - 42211538
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatat 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  42211575 tgagagagaaaattgtcaaaaaatgattttacaaatat 42211538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33910103 - 33910147
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||    
T  33910103 tgagagagaaagttgtcaaaaaatggttgaacaaatatcatttct 33910147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 34400655 - 34400619
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||| ||||||||||||||||||||||||||    
T  34400655 aaaattgtcataaaatgattgtacaaatatcatttct 34400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6865802 - 6865849
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||| |||||| ||| || ||||||||||||||||||||||    
T  6865802 tgagagagaaagttgtcacaaagtggttgtacaaatatcatttctcta 6865849  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34080316 - 34080359
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttc 44  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||    
T  34080316 tgagagacaaaattgtcataaaatgattgtataaatatcatttc 34080359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39458713 - 39458666
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||| |||||||||| || ||||||| ||||||||||||||    
T  39458713 tgagagagaaagttgtcaaaaactggttgtacagatatcatttctcta 39458666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 372735 - 372781
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| |||||| ||||||||| |||||||||||    
T  372735 tgagagagaaagttgtcacaaaatggttgtacaaaaatcatttctct 372781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 11148544 - 11148510
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| ||||||||||||||||||||||||    
T  11148544 ttgtcaaaaattgattgtacaaatatcatttctct 11148510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12203203 - 12203157
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| ||||  ||||||| |||||||||||||||||||||    
T  12203203 tgagagagaaagttgtacaaaaatggttgtacaaatatcatttctct 12203157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13734375 - 13734421
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| ||| || |||||||||||||||||||||    
T  13734375 tgagagagaaagttgtcataaagtggttgtacaaatatcatttctct 13734421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32732133 - 32732179
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| ||||  |||||||||||||||||||| ||||||||    
T  32732133 tgagagagaaagttgtacaaaaatgattgtacaaatataatttctct 32732179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 35075614 - 35075648
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||| ||||||||||||||||    
T  35075614 ttgtcaaaaaatgattgttcaaatatcatttctct 35075648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 38500980 - 38500942
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  38500980 aaaattgtcacaaaatggttgtacaaatatcatttctct 38500942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 2629851 - 2629818
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||| ||||||||||||||||||||    
T  2629851 ttgtcaaaaaatggttgtacaaatatcatttctc 2629818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8442215 - 8442170
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| ||||  |||||| |||||||||||||||||||||    
T  8442215 tgagagagaaagttgtacaaaaataattgtacaaatatcatttctc 8442170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 19983878 - 19983841
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  19983878 aaaattgtcataaaataattgtacaaatatcatttctc 19983841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 27440512 - 27440479
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| |||||||||||||||||||||||||||    
T  27440512 ttgtcacaaaatgattgtacaaatatcatttctc 27440479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 28501629 - 28501592
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  28501629 aaaattgtcacaaaatggttgtacaaatatcatttctc 28501592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 30334785 - 30334826
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||| ||| || ||||||||||||||||||||    
T  30334785 agagaaaattgtcataaagtggttgtacaaatatcatttctc 30334826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 41460149 - 41460116
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||||||||| ||||||||||||||    
T  41460149 ttgtcaaaaaatgattgtataaatatcatttctc 41460116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7080586 - 7080546
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcat 41  Q
    ||||||||||| ||||  |||||||||||||||||||||||    
T  7080586 tgagagagaaagttgtacaaaaatgattgtacaaatatcat 7080546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 7927394 - 7927354
Alignment:
Q  7 agaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||| ||| |||||||||||| |||||||||||||||    
T  7927394 agaaaattatcacaaaatgattgtataaatatcatttctct 7927354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 11881025 - 11881065
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctctacttaa 53  Q
    |||| ||||||| ||||||||||||||||||||||| ||||    
T  11881025 ttgttaaaaaataattgtacaaatatcatttctctatttaa 11881065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 13089820 - 13089860
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctctacttaa 53  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  13089820 ttgtcaaaaaatggttgttcaaatatcatttctcttcttaa 13089860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 34693260 - 34693288
Alignment:
Q  19 aaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||||||||||||||    
T  34693260 aaaaatgattgtacaaatatcatttctct 34693288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 50797836 - 50797790
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  50797836 tgagagagaaagttgtcacaaaatgattgtacaaatatcatttctct 50797790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37690474 - 37690429
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||    
T  37690474 tgagagagaaaattgtcataaagtgattgtacaaatatcatttctc 37690429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47398466 - 47398511
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||    
T  47398466 tgagagagaaaattgtcaaaaaatgaatgttcaaatatcatttctc 47398511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48872043 - 48872088
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  48872043 tgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctc 48872088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4857967 - 4857920
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  4857967 tgagagagaaagttgtcaaaaagtgattgttcaaatatcatttctcta 4857920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 17526456 - 17526418
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  17526456 aaaattgtcaaaatatgattgtacaaatatcatttctct 17526418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 26159478 - 26159440
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  26159478 aaaattgtcaaaaaatgattgttcaaatatcatttctct 26159440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 30536028 - 30535990
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  30536028 aaaattgttaaaaaatgattgtacaaatatcatttctct 30535990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40596069 - 40596115
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| |||||| |||||||||||||||||||||    
T  40596069 tgagagagaaagttgtcacaaaatggttgtacaaatatcatttctct 40596115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43612095 - 43612141
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| |||||| |||||||||||||||||||||    
T  43612095 tgagagagaaagttgtcataaaatggttgtacaaatatcatttctct 43612141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44517976 - 44518022
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  44517976 tgagagagaaaattgtcacaaaatgattatacaaatatgatttctct 44518022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45272175 - 45272221
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||||||| || |||||||||||||||||||||    
T  45272175 tgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctct 45272221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 48325793 - 48325839
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||    
T  48325793 tgagatagaaaattgtcacaaaatggttgtacaaatatcatttctct 48325839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 48678987 - 48679025
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  48678987 aaaattgtcataaaatgattgtacaaatatcatttctct 48679025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16836130 - 16836175
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||||    
T  16836130 tgagagaaaaagttgtcacaaaatgattgtacaaatatcatttctc 16836175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40139171 - 40139126
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||    
T  40139171 tgagagagaaagttgtcataaaatggttgtacaaatatcatttctc 40139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 40238471 - 40238438
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||||||||||||||||||||||||    
T  40238471 ttgtcaaaaaatgattgtacaaatatcatttctc 40238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41507209 - 41507254
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||    
T  41507209 tgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 41507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50882124 - 50882168
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||    
T  50882124 tgagagagaaaattgtcacaaaatgaatgttcaaatatcatttct 50882168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51571460 - 51571416
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||| |||||||||| || |||||||||||||||||||    
T  51571460 tgagagagaaagttgtcaaaaagtggttgtacaaatatcatttct 51571416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 34941954 - 34941993
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  34941954 aaaattgtcacaaaatgatagtacaaatatcatttctcta 34941993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 39669843 - 39669804
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  39669843 aaaattgtcacaaaatggttgtacaaatatcatttctcta 39669804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 611650 - 611696
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||| ||  ||||||||||| ||||||||||||||||    
T  611650 tgagagagaaaattatcccaaaatgattgttcaaatatcatttctct 611696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 11812424 - 11812386
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  11812424 aaaattgtcacaaaatgattgtacaactatcatttctct 11812386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14983829 - 14983783
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||| ||||| || |||||||||||||||||||||    
T  14983829 tgagagagaaagttgttaaaaagtggttgtacaaatatcatttctct 14983783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 23554788 - 23554750
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  23554788 aaaattatcaaaaaatggttgtacaaatatcatttctct 23554750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27687534 - 27687580
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||| |||||| |||||| |||||||||||||||||||||    
T  27687534 tgagagataaagttgtcacaaaatggttgtacaaatatcatttctct 27687580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30196770 - 30196724
Alignment:
Q  1 tgagagagaaaattgtcaaaaaat-gattgtacaaatatcatttctc 46  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  30196770 tgagagagaaagttgtcaaaaaattgattgtagaaatatcatttctc 30196724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 35883645 - 35883679
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||| ||||||||||||||||||||||    
T  35883645 ttgtcaaaaaataattgtacaaatatcatttctct 35883679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42539463 - 42539417
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| | |||| |||||||||||||||||||||    
T  42539463 tgagagagaaagttgtcacataatggttgtacaaatatcatttctct 42539417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 44672068 - 44672102
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||| ||||||||||||||||||||||||||||||    
T  44672068 ttgttaaaaaatgattgtacaaatatcatttctct 44672102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49453536 - 49453490
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| ||| || |||||||||||||||||||||    
T  49453536 tgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 49453490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 2206234 - 2206275
Alignment:
Q  7 agaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||| ||||| ||||||||| |||||||||||||    
T  2206234 agaaaattgtcacaaaattattgtacaagtatcatttctcta 2206275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18336203 - 18336158
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||||| ||||||| ||| |||||||||||||||    
T  18336203 tgagagagaaagttgtcacaaaatgaatgttcaaatatcatttctc 18336158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 29254100 - 29254137
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  29254100 aaaattgttaaaaaatgattgtacaagtatcatttctc 29254137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 35335520 - 35335565
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||| ||||||| || |||||||||||| |||||||||    
T  35335520 agagagaaaattatcaaaaagtggttgtacaaatatgatttctcta 35335565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 42615897 - 42615860
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| | |||||||||||||||||||||||||||||    
T  42615897 aaaattattaaaaaatgattgtacaaatatcatttctc 42615860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 43641023 - 43641056
Alignment:
Q  15 gtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||| ||||||||||||||||||||||    
T  43641023 gtcaaaaaatggttgtacaaatatcatttctcta 43641056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 45863755 - 45863792
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  45863755 aaaattatcaaaaaataattgtacaaatatcatttctc 45863792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 49931586 - 49931553
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||| |||||||||||||||||||||||||||||    
T  49931586 ttgttaaaaaatgattgtacaaatatcatttctc 49931553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 1922459 - 1922495
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  1922459 aaaattatcaaaaagtgattgtacaaatatcatttct 1922495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 27563510 - 27563482
Alignment:
Q  20 aaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||||||||||||||||    
T  27563510 aaaatgattgtacaaatatcatttctcta 27563482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 29716280 - 29716236
Alignment:
Q  2 gagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| |||||||||| | ||||||||||||||||| |||||||    
T  29716280 gagagataaaattgtcacagaatgattgtacaaatataatttctc 29716236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 39788763 - 39788799
Alignment:
Q  11 aattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||| | ||||||||||||||||||||||    
T  39788763 aattgtcaaaaagtaattgtacaaatatcatttctct 39788799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 51038010 - 51037978
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||||||||||| |||||||||||||    
T  51038010 ttgtcaaaaaatgattgtataaatatcatttct 51037978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 52715011 - 52714979
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||| ||||||||||||||||||||||||||    
T  52715011 ttgtcacaaaatgattgtacaaatatcatttct 52714979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18662 - 18707
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||    
T  18662 tgagagagaaaattgtcacaaattgattgtacaaatatcatttctc 18707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2163747 - 2163702
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||    
T  2163747 tgagagagaaaattgtcacaaattgattgtacaaatatcatttctc 2163702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2175380 - 2175335
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||    
T  2175380 tgagagagaaaattgtcacaaattgattgtacaaatatcatttctc 2175335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 1196101 - 1196057
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  1196101 agagagaaagttgtcaaaaagtgattgtacaaatatcatttctct 1196057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 3180020 - 3180064
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||    
T  3180020 agagataaagttgtcaaaaaatgattgtacaaatatcatttctct 3180064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 2242056 - 2242094
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  2242056 aaaattgtcaaaaaatgattgttcaaatatcatttctct 2242094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 6256472 - 6256435
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||| |||||||||||||||||||||    
T  6256472 aaaattgtcaaaaaataattgtacaaatatcatttctc 6256435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32644668 - 32644623
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||    
T  32644668 tgagagagaaagttgtcaaaaaatagttgtacaaatatcatttctc 32644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 31413579 - 31413539
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcattt 43  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  31413579 agagagaaaattgtcacaaaataattgtacaaatatcattt 31413539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6110528 - 6110574
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  6110528 tgagagagaaagttgtcgaaaaa-gattgtacaaatatcatttctcta 6110574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 1286965 - 1286923
Alignment:
Q  4 gagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||| |||||||||||| ||||| |||||||||||||||    
T  1286965 gagagaaagttgtcaaaaaataattgttcaaatatcatttctc 1286923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 8505812 - 8505846
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||| ||||||||||||||||    
T  8505812 ttgtcaaaaaatgattgttcaaatatcatttctct 8505846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 11785392 - 11785354
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  11785392 aaaattgtcacaaaatggttgtacaaatatcatttctct 11785354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 15722541 - 15722575
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  15722541 ttgtcacaaaatgattgtacaaatatcatttctct 15722575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 16337104 - 16337142
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  16337104 aaaattgtcataaagtgattgtacaaatatcatttctct 16337142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 17417269 - 17417307
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  17417269 aaaattgtcacataatgattgtacaaatatcatttctct 17417307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 30714712 - 30714678
Alignment:
Q  14 tgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||| |||||||||||||||||||||||||||||    
T  30714712 tgtcacaaaatgattgtacaaatatcatttctcta 30714678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31517195 - 31517241
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||| |||||||||| || |||||||||||||||||||||    
T  31517195 tgagagaaaaagttgtcaaaaagtggttgtacaaatatcatttctct 31517241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 11635573 - 11635606
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||| |||||||||||||||    
T  11635573 ttgtcaaaaaatgattgttcaaatatcatttctc 11635606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 12500061 - 12500098
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  12500061 aaaattgtcacaaaatgattgtgcaaatatcatttctc 12500098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 12507390 - 12507427
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  12507390 aaaattgtcacaaaatgattgtgcaaatatcatttctc 12507427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 12508840 - 12508803
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  12508840 aaaattgtcacaaaatgattgtgcaaatatcatttctc 12508803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 30945863 - 30945822
Alignment:
Q  6 gagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||| |||||| |||||||||||| |||||||||||||||    
T  30945863 gagaaagttgtcacaaaatgattgtataaatatcatttctct 30945822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 32135450 - 32135491
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||| ||||  ||||||||||||||||||||||||||||    
T  32135450 agagaaagttgtacaaaaatgattgtacaaatatcatttctc 32135491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 34792049 - 34792020
Alignment:
Q  19 aaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||||||||||||||||||||||    
T  34792049 aaaaatgattgtacaaatatcatttctcta 34792020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 1246393 - 1246429
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||| |||||||||||| |||||||||||||    
T  1246393 aaaattgtcacaaaatgattgtaaaaatatcatttct 1246429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 7636473 - 7636501
Alignment:
Q  20 aaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||||||||||||||||    
T  7636473 aaaatgattgtacaaatatcatttctcta 7636501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 12501511 - 12501475
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  12501511 aaaattgtcacaaaataattgtacaaatatcatttct 12501475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16352175 - 16352219
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||||||||| | |||||| ||||| |||||||||||||    
T  16352175 tgagagagaaaattgttataaaatggttgtataaatatcatttct 16352219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 21857602 - 21857638
Alignment:
Q  10 aaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  21857602 aaattgtcataaaatggttgtacaaatatcatttctc 21857638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 63)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 12387685 - 12387725
Alignment:
Q  6 gagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  12387685 gagaaagttgtcaaaaaatgattgtacaaatatcatttctc 12387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 15638194 - 15638159
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||||||||||||||||||||||||||||    
T  15638194 ttgtcaaaaaatgattgtacaaatatcatttctcta 15638159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42490965 - 42490919
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||||||| || |||||||||||||||||||||    
T  42490965 tgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctct 42490919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1627573 - 1627610
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatat 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  1627573 tgagagagaaagttgtcaaaaaatgattgtacaaatat 1627610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 2738302 - 2738339
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||||||| |||||||||||||||    
T  2738302 aaaattgtcaaaaaatgattgttcaaatatcatttctc 2738339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32365682 - 32365727
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||    
T  32365682 tgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 32365727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 56474798 - 56474843
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctctacttaaa 54  Q
    |||||||| ||||||||||||| ||||||||||||||||| |||||    
T  56474798 aaaattgtaaaaaaatgattgttcaaatatcatttctctatttaaa 56474843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5386429 - 5386385
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||| ||||||||||||| |||| ||||||||||||||    
T  5386429 tgagagagaaagttgtcaaaaaatggttgttcaaatatcatttct 5386385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 18568463 - 18568507
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||    
T  18568463 agagagaaaattgtcacaaaataattctacaaatatcatttctct 18568507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 31559568 - 31559536
Alignment:
Q  16 tcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||||||||||||||||||||    
T  31559568 tcaaaaaatgattgtacaaatatcatttctcta 31559536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 2109484 - 2109441
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||    
T  2109484 agagaaagttgtcaaaagatggttgtacaaatatcatttctcta 2109441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 12074185 - 12074224
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  12074185 aaaattgtcataaaatggttgtacaaatatcatttctcta 12074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26718425 - 26718378
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||||| ||||||  ||| |||||||||||||||||    
T  26718425 tgagagagaaaattgtcataaaatggatgttcaaatatcatttctcta 26718378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26731053 - 26731006
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||||| ||||||  ||| |||||||||||||||||    
T  26731053 tgagagagaaaattgtcataaaatggatgttcaaatatcatttctcta 26731006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37727069 - 37727116
Alignment:
Q  1 tgagagagaaaattgtcaaaaaat-gattgtacaaatatcatttctct 47  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  37727069 tgagagagcaaattatcaaaaaattgattgtacaaatatcatttctct 37727116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41347482 - 41347528
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  41347482 tgagagagaaagttgtcaaaa-atgattgtacaaatataatttctcta 41347528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 42915257 - 42915292
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||| |||||||||||||||||||||||||    
T  42915257 ttgtcaaaaagtgattgtacaaatatcatttctcta 42915292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50980647 - 50980600
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||  |||| | |||||||||||||||||||||||||||||    
T  50980647 tgagagagaaggttgttagaaaatgattgtacaaatatcatttctcta 50980600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4106098 - 4106053
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||    
T  4106098 tgagagagaaaattgtaaaaaaaa-attgtacaaatatcatttctct 4106053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4511870 - 4511824
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| |||||| || ||||||||||||||||||    
T  4511870 tgagagagaaagttgtcataaaatggttatacaaatatcatttctct 4511824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5234486 - 5234532
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| || ||| ||| ||||||||||||||||||||||||    
T  5234486 tgagagagaaagttatcacaaagtgattgtacaaatatcatttctct 5234532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 9162099 - 9162065
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  9162099 ttgtcacaaaatgattgtacaaatatcatttctct 9162065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 22893906 - 22893868
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  22893906 aaaattgtacaaaaatgattgtacaaatatcatttctct 22893868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 22945574 - 22945536
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  22945574 aaaattgtacaaaaatgattgtacaaatatcatttctct 22945536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 24235357 - 24235319
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  24235357 aaaattgtcacaaattgattgtacaaatatcatttctct 24235319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27384232 - 27384186
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||| | |||||| |||||||||||||||||||||    
T  27384232 tgagagagaaagttgtaataaaatggttgtacaaatatcatttctct 27384186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 35661631 - 35661669
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  35661631 aaaattgtcataaaatggttgtacaaatatcatttctct 35661669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 36728656 - 36728694
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  36728656 aaaattgtcaaaaaatggtcgtacaaatatcatttctct 36728694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 39158142 - 39158104
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  39158142 aaaattatcaaaaaatgattgttcaaatatcatttctct 39158104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 41119497 - 41119543
Alignment:
Q  2 gagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||| |||||| ||| || ||||||||||||||||||||||    
T  41119497 gagagagaaagttgtcacaaagtggttgtacaaatatcatttctcta 41119543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 41262648 - 41262690
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||    
T  41262648 agagaaagttgtcacaaaataattgtacaaatatcatttctct 41262690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 43168748 - 43168786
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  43168748 aaaattgtcacaaaatggttgtacaaatatcatttctct 43168786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45678319 - 45678273
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||||||||  ||||||||||||||||||| |||||||||    
T  45678319 tgagagataaaattgtacaaaaatgattgtacaaataacatttctct 45678273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 54036544 - 54036590
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| ||| |||||| |||||| |||||||||||||||||||||    
T  54036544 tgagagataaagttgtcacaaaatggttgtacaaatatcatttctct 54036590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1580298 - 1580342
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||    
T  1580298 tgagagagaaaattgtcacaaagtg-ttgtacaaatatcatttctc 1580342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4974156 - 4974111
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||| |||||||  ||||||||||||||||||||    
T  4974156 tgagagagaaagttgttaaaaaatagttgtacaaatatcatttctc 4974111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 9776366 - 9776403
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  9776366 aaaattgtcaaaaaatagttgtacaaatatcatttctc 9776403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 14443231 - 14443198
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||||| |||||||||||||||    
T  14443231 ttgtcaaaaaatgattgttcaaatatcatttctc 14443198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 19678654 - 19678617
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  19678654 aaaattgtcaaaaaataattgtacaaatatgatttctc 19678617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 23220368 - 23220335
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||| ||||||||||||||||||||    
T  23220368 ttgtcaaaaaatggttgtacaaatatcatttctc 23220335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24310536 - 24310581
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| ||||  ||||||| ||||||||||||||||||||    
T  24310536 tgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 24310581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28899230 - 28899275
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| ||||   |||||||||||||||||||||||||||    
T  28899230 tgagagagaaagttgtaccaaaatgattgtacaaatatcatttctc 28899275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 29384231 - 29384268
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  29384231 aaaattgtcataaagtgattgtacaaatatcatttctc 29384268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 32621681 - 32621636
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||| |||||| |||||| |||| |||||||||||||||||    
T  32621681 agagagaaagttgtcacaaaatggttgtgcaaatatcatttctcta 32621636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37731971 - 37731926
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| ||||   |||||||||||||||||||||||||||    
T  37731971 tgagagagaaagttgtaccaaaatgattgtacaaatatcatttctc 37731926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39241316 - 39241361
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||||| ||| || ||||||||||||||||||||    
T  39241316 tgagagagaaagttgtcacaaattggttgtacaaatatcatttctc 39241361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 39684677 - 39684636
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||| ||| || ||||||||||||||||||||    
T  39684677 agagaaaattgtcagaaagtggttgtacaaatatcatttctc 39684636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 40335826 - 40335789
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||| | |||||||||||||||||||||||||||    
T  40335826 aaaattgtaataaaatgattgtacaaatatcatttctc 40335789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 42178084 - 42178121
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||| | |||||||||||||||||||||||||    
T  42178084 aaaattgtcacataatgattgtacaaatatcatttctc 42178121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 46173594 - 46173549
Alignment:
Q  2 gagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| |||||| ||| || |||||||||||||||||||||    
T  46173594 gagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 46173549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 51107485 - 51107514
Alignment:
Q  19 aaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||||||||||||||||||||||    
T  51107485 aaaaatgattgtacaaatatcatttctcta 51107514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 55996459 - 55996422
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||| | |||||||||||||||||||||||||||    
T  55996459 aaaattgttagaaaatgattgtacaaatatcatttctc 55996422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9095993 - 9095949
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||||||||  |||||| |||||||||||| |||||||    
T  9095993 tgagagagaaaattgtacaaaaataattgtacaaataacatttct 9095949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 10994189 - 10994225
Alignment:
Q  12 attgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  10994189 attgtcacaaaatggttgtacaaatatcatttctcta 10994225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 14113649 - 14113693
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctctacttaa 53  Q
    |||||||||| |||||||||||| ||||||||||| |||| ||||    
T  14113649 aaaattgtcataaaatgattgtataaatatcatttatctaattaa 14113693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 21014087 - 21014055
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||||||||||| ||||||||||||||    
T  21014087 ttgtcaaaaaatgattgttcaaatatcatttct 21014055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 22007875 - 22007831
Alignment:
Q  4 gagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||| | ||||| |||||| |||||||||||||||||||||||    
T  22007875 gagagagagttgtccaaaaataattgtacaaatatcatttctcta 22007831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 26440718 - 26440674
Alignment:
Q  4 gagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||| |||||||||| ||| || ||||||||||||||||||||||    
T  26440718 gagataaaattgtcacaaagtggttgtacaaatatcatttctcta 26440674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 28676171 - 28676211
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||| |||||| |||||| |||||||||||||||||||    
T  28676171 agagaaagttgtcacaaaatggttgtacaaatatcatttct 28676211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 33860582 - 33860614
Alignment:
Q  16 tcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||| ||||||||||||||||    
T  33860582 tcaaaaaatgattgtataaatatcatttctcta 33860614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 50291309 - 50291281
Alignment:
Q  19 aaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||||||||||||||    
T  50291309 aaaaatgattgtacaaatatcatttctct 50291281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 54622631 - 54622675
Alignment:
Q  2 gagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||| | |||||| | |||||||||||||||||||||||||    
T  54622631 gagagagagagttgtcatataatgattgtacaaatatcatttctc 54622675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 54801532 - 54801560
Alignment:
Q  20 aaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||||||||||||||||    
T  54801532 aaaatgattgtacaaatatcatttctcta 54801560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 9882 - 9921
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  9882 aaaattgtgaaaaaatgattgtacaaatatcatttctcta 9921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 6558 - 6600
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctctacttaaaa 55  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  6558 ttgttaaaaaatgattgttcaaatatcatttctctacttaaaa 6600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 38218368 - 38218410
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  38218368 agagataaaattgtcacaaaatgattgtacaaatatcatttct 38218410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41985115 - 41985161
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  41985115 tgagagagaaagttgtcacaaattgattgtacaaatatcatttctct 41985161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 6353762 - 6353725
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  6353762 aaaattgtcaaaaaatggttgtacaaatatcatttctc 6353725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33465054 - 33465099
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||    
T  33465054 tgagagagaaaattgtacaaaaatggttgtacaaatatcatttctc 33465099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37848635 - 37848680
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||    
T  37848635 tgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 37848680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 27164875 - 27164914
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctctactta 52  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  27164875 ttgtcacaaattgattgtacaaatatcatttctctactta 27164914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45420075 - 45420122
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    ||||||||||| ||||||||||||  |||| |||||||||||||||||    
T  45420075 tgagagagaaagttgtcaaaaaatagttgttcaaatatcatttctcta 45420122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 46148199 - 46148164
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||||| |||||||||||||||||||    
T  46148199 ttgtcaaaaaatgattttacaaatatcatttctcta 46148164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 47905153 - 47905188
Alignment:
Q  12 attgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||| |||||||||||||||||||||    
T  47905153 attgtcaaaaaatggttgtacaaatatcatttctct 47905188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 49142532 - 49142579
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 48  Q
    |||||||||||||| |  ||||||| ||||||||||||||||||||||    
T  49142532 tgagagagaaaattttacaaaaatggttgtacaaatatcatttctcta 49142579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2323349 - 2323303
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| |||||  |||||||||||||||||||||    
T  2323349 tgagagagaaagttgtcataaaattgttgtacaaatatcatttctct 2323303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2469748 - 2469702
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| ||| || |||||||||||||||||||||    
T  2469748 tgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 2469702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22330646 - 22330692
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| ||| || |||||||||||||||||||||    
T  22330646 tgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 22330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 23848130 - 23848088
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||    
T  23848130 agagaaagttgttaaaaaatgattatacaaatatcatttctct 23848088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 32919014 - 32919052
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  32919014 aaaattgtcacaaaatgattgtataaatatcatttctct 32919052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 35005131 - 35005169
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  35005131 aaaattctcaaaaattgattgtacaaatatcatttctct 35005169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37352005 - 37352051
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||| |||||| ||| || |||||||||||||||||||||    
T  37352005 tgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 37352051  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 37352147 - 37352109
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  37352147 aaaattgtcaaaaaatggttgttcaaatatcatttctct 37352109  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 37392076 - 37392042
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||| |||||||||||||||||||||    
T  37392076 ttgtcaaaaaatggttgtacaaatatcatttctct 37392042  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 40693566 - 40693608
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctctacttaaaa 55  Q
    ||||||||||||  |||||||||||||||||||||| ||||||    
T  40693566 ttgtcaaaaaatagttgtacaaatatcatttctctaattaaaa 40693608  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 42552936 - 42552898
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  42552936 aaaattgtataaaaatgattgtacaaatatcatttctct 42552898  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43213364 - 43213318
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||| | ||| || |||||||||||||||||||||    
T  43213364 tgagagagaaaattgttagaaagtggttgtacaaatatcatttctct 43213318  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 44187724 - 44187690
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||||||||||||||| |||||||||||||    
T  44187724 ttgtcaaaaaatgattgtacacatatcatttctct 44187690  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 472988 - 472947
Alignment:
Q  2 gagagagaaaattgtcaaaaaatgattgtacaaatatcattt 43  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||    
T  472988 gagagagaaaattatcacaaaatgattttacaaatatcattt 472947  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 1284451 - 1284414
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  1284451 aaaattatcaaaaaatgattgtacaaatattatttctc 1284414  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 3247106 - 3247069
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  3247106 aaaattgtcactaaatgattgtacaaatatcatttctc 3247069  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 6699869 - 6699902
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatt 42  Q
    |||||||||| |||||||||||||||||||||||    
T  6699869 aaaattgtcataaaatgattgtacaaatatcatt 6699902  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8459659 - 8459614
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||| ||||| || ||||||||||||||||||||    
T  8459659 tgagagagaaagttgttaaaaagtggttgtacaaatatcatttctc 8459614  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 34978333 - 34978296
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  34978333 aaaattgtcaaaaagtgattgttcaaatatcatttctc 34978296  T

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Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 41080159 - 41080126
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||| |||||||||||||||||||||||||||    
T  41080159 ttgtcacaaaatgattgtacaaatatcatttctc 41080126  T

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Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43444680 - 43444635
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    ||||||||||| |||||| ||| || ||||||||||||||||||||    
T  43444680 tgagagagaaagttgtcataaagtggttgtacaaatatcatttctc 43444635  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 17909088 - 17909120
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||||||||||||||||||||| ||||||    
T  17909088 ttgtcaaaaaatgattgtacaaatattatttct 17909120  T

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Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 19510374 - 19510418
Alignment:
Q  3 agagagaaaattgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    ||||||||| |||| | ||||| ||||||||||||||||||||||    
T  19510374 agagagaaagttgtgagaaaataattgtacaaatatcatttctct 19510418  T

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Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 23910289 - 23910321
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||||||||| |||||||||||||||||||    
T  23910289 ttgtcaaaaaatggttgtacaaatatcatttct 23910321  T

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Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38547305 - 38547349
Alignment:
Q  1 tgagagagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||| ||||| ||||||||||||  |||||||||||||||||||    
T  38547305 tgagaaagaaagttgtcaaaaaatagttgtacaaatatcatttct 38547349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 49025333 - 49025373
Alignment:
Q  5 agagaaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    ||||||| |||||| ||||| ||||||||||||||||||||    
T  49025333 agagaaagttgtcataaaataattgtacaaatatcatttct 49025373  T

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Target: scaffold1625 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 819 - 853
Alignment:
Q  13 ttgtcaaaaaatgattgtacaaatatcatttctct 47  Q
    |||||||||||||||||||||||||||||| ||||    
T  819 ttgtcaaaaaatgattgtacaaatatcattcctct 853  T

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Target: scaffold0449 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 7885 - 7851
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcattt 43  Q
    |||||||||||||||| ||||||||||||||||||    
T  7885 aaaattgtcaaaaaataattgtacaaatatcattt 7851  T

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Target: scaffold0201 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 8509 - 8472
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttctc 46  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  8509 aaaattgttaaaaaatgattgttcaaatatcatttctc 8472  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 49386 - 49426
Alignment:
Q  9 aaaattgtcaaaaaa-tgattgtacaaatatcatttctcta 48  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  49386 aaaattgtcaaaaaaatggttgtacaaatatcatttctcta 49426  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 404785 - 404749
Alignment:
Q  9 aaaattgtcaaaaaatgattgtacaaatatcatttct 45  Q
    |||||||| |||||||||||||||| |||||||||||    
T  404785 aaaattgttaaaaaatgattgtacacatatcatttct 404749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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