View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2395_low_5 (Length: 202)
Name: NF2395_low_5
Description: NF2395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2395_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 29841908 - 29842054
Alignment:
| Q |
8 |
catcatcaccatcaactatttttctctttt-acaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacatggattccgcttt |
106 |
Q |
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| T |
29841908 |
catcatcaccatcaactatttttctctttttacaaggaaggatcggtgaattgaatatcctccaagctacttttgtgattgagtacatggattccgcttt |
29842007 |
T |
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| Q |
107 |
ttatatgaattgatttcatatacctaacctctgcatggagccattca |
153 |
Q |
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| T |
29842008 |
ttatacgaattgatttcatatacctaacctctgcatggagccattca |
29842054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 29829564 - 29829447
Alignment:
| Q |
8 |
catcatcaccatcaactatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacatggattccgctttt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29829564 |
catcatcaccatcaactatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttt |
29829465 |
T |
|
| Q |
108 |
tatatgaattgatttcat |
125 |
Q |
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|||| ||||||||||||| |
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| T |
29829464 |
tatacgaattgatttcat |
29829447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 28154989 - 28154932
Alignment:
| Q |
44 |
aaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacatggattcc |
101 |
Q |
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||||||| ||||||||||||||| ||| ||||||||| || || | |||||||||||| |
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| T |
28154989 |
aaggatcggtgaattgaatatccgccatgctacttttctgctttaatacatggattcc |
28154932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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