View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2396_high_10 (Length: 333)
Name: NF2396_high_10
Description: NF2396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2396_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 11653209 - 11652907
Alignment:
| Q |
16 |
gtaacttcttccacatttcctctcatcattccaaattctaacaaatctactaaacaatgacacatacatgaccaaatttcaagccaacattttattagtt |
115 |
Q |
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| T |
11653209 |
gtaacttctaccactgttcttctcatcattccaa-ttctaacaaatctactaaacaatgacacatacatgaccaaatttcaagccaacattttattagtt |
11653111 |
T |
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| Q |
116 |
tatataaccnnnnnnnnngttgtgttagtaaacattggtatgtacgtgatcatatatactgagcatgatatattttaactttcacggtnnnnnnntggac |
215 |
Q |
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| T |
11653110 |
tatataccatttttttgttttgtgttagtaaacattggtatgtacgtgatcatatatactgaacatgatatattttaactttcacggtaaaaaaatggac |
11653011 |
T |
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| Q |
216 |
caacttgtcatcatatatatggtgtatagtatcaacatgttatcgttcataaatatatgacaaaattacaagtcaaaatcaattgagcatcatataatta |
315 |
Q |
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| T |
11653010 |
caacttgtcatcatatatatggtgtatagcatcaacatgttatcgttcataaatatatgacaaaattacaagtcaaaatcaattgagcatcatataatca |
11652911 |
T |
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| Q |
316 |
gctt |
319 |
Q |
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|||| |
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| T |
11652910 |
gctt |
11652907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 290
Target Start/End: Complemental strand, 11638571 - 11638424
Alignment:
| Q |
141 |
tagtaaacattggtatgtacgtgatcatatatactgagcatgatatattttaactttcacggt--nnnnnnntggaccaacttgtcatcatatatatggt |
238 |
Q |
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| T |
11638571 |
tagtaaacattgatatgtacgtgatcatatatactgaacatgatatattttaactttcacggtaaaaaaaaaaggaccaatttgtcatc----atatggt |
11638476 |
T |
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| Q |
239 |
gtatagtatcaacatgttatcgttcataaatatatgacaaaattacaagtca |
290 |
Q |
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| T |
11638475 |
gcattgcatcagcatgttattgttcataaatatatgacaaaatcacaagtca |
11638424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 11635012 - 11634952
Alignment:
| Q |
141 |
tagtaaacattggtatgtacgtgatcatatatactgagcatgatatattttaactttcacg |
201 |
Q |
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| T |
11635012 |
tagtaaacattgatatgtacgtgatcatatatactgaacatgatatattttaattttcacg |
11634952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 11619993 - 11619924
Alignment:
| Q |
134 |
gttgtgttagtaaacattggtatgtacgtgatcatatatactgagcatgatatattttaactttcacggt |
203 |
Q |
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| T |
11619993 |
gttgttttagtaaacattgaaatgtacgtgatcatagataccgaacatgatatcttttaactttcacggt |
11619924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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